PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01320.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 337aa    MW: 37555.7 Da    PI: 5.7689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.8e-23140201259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  OGLUM12G01320.1 140 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQEdKNDPPMFQVTYSNEHTCT 201
                      8***************************99999*******9862579*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.31E-21132201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-23133201IPR003657WRKY domain
SMARTSM007742.4E-33139202IPR003657WRKY domain
PfamPF031065.3E-25140200IPR003657WRKY domain
PROSITE profilePS5081117.373140203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAVTESVCLS DEQQAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HAMRALNVAL  60
SVMNQPHASS SSSAAAAAAG HHFPVMTMIK AESTPANSPA ADVSDNHVAG KARRSSPAKR  120
RRINCEDKSS WVYHTVVPHE DGYQWRKYGE KKIQGTHFTR SYFRCTYRDD RGCQATKQIQ  180
QEDKNDPPMF QVTYSNEHTC TTTRLINNTN NNPAALHSLT ANPNGHPDDD SDDTILTKMI  240
KQEQQAAWLP SPPPDLTTIS NNFDETPGLH VSQEVPPCSS NSSAISHYAD EFDHHQMGQQ  300
LETTVMEEAL GLGADLDDPY FYDPNLLLIY ENLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13140200968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0E0BN140.0A0A0E0BN14_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01320.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-18WRKY family protein