PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G01270.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 875aa MW: 96234.6 Da PI: 9.1183

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G01270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	68.3	1.2e-21	642	703	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ OGLUM12G01270.1 642 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 703 8*************************99999***8761679***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01103	1.6E-10	253	488	IPR000184	Bacterial surface antigen (D15)
Gene3D	G3DSA:2.40.160.50	4.9E-10	390	489	No hit	No description
Gene3D	G3DSA:2.20.25.80	6.1E-23	630	704	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-22	633	704	IPR003657	WRKY domain
PROSITE profile	PS50811	15.996	636	705	IPR003657	WRKY domain
SMART	SM00774	2.2E-33	641	704	IPR003657	WRKY domain
Pfam	PF03106	3.5E-24	642	702	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0019867	Cellular Component	outer membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MVKKQRKVSS GLLKRMAGRI ERWYHDEGFQ CAQVVGYNGN LDAGEVVCEV VEGDITKVEY 60 QFVEAMSSTA TPASLSLIGS FLNSITVKLH LRPGHIYNNG AGKQALKNID SLGLFSTVEV 120 EPRPDETNQG GVIVAIKLKE HDPKSAQVIT DWSIVSGSQG TPTLASIQPG GTVSFEHHDI 180 CGLKRSLIGS VTTSNLLNPE DDLSFKLEYA HPYLDGVDNR SRNRTFKISC FNSRKLSPIF 240 VAGPNMYEAP PIWSFTKQSK FTYGLVVEEI TTRDENNNIC THGSRQLPSG ALSMIGPPTT 300 LSGTGVDRMA FLQANITRDN TEFVNGATIG DRCIFQYSEQ SFLVGYRWIK ASVLEARTLF 360 NRHQLTVTKF INLNKQEKGP RKPPPAVLAL HGRYAGCVGD LPSYGAFALG GPHSVRGYGM 420 GELGASRNLL EVATELSVPI TVKNRHTQVY AFAEHGTDLG SSKDVKGNPT EFFRRVGHGS 480 SYGVGVKLGA VRAEYAVDHN AGTGAFFLRF ERNPGLNLRD LAVVKLTMEG AGRIPGMARH 540 ILPARMMVVN VRMGSKVMES TNAKRRAPIP TPSSSSPSSL PSETTRPPQN LRFFSETEMA 600 LDSVPSYPSD LGSSRARTPQ QQRVSPRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF 660 PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSSKIVG STPDSTVQSR 720 KAISICFNSH GQTGEQPTFL SSSASLLSPS MQSYSSNQQP DMNTYSRQFQ WADTSSSTSN 780 APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIESLT PSLDPLKGAK LLILLGTRAF 840 LLPRYMDSEI RAIMAQYMPL DNQGDVPNHS HHIEL

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MVKKQRKVSS GLLKRMAGRI ERWYHDEGFQ CAQVVGYNGN LDAGEVVCEV VEGDITKVEY  60
QFVEAMSSTA TPASLSLIGS FLNSITVKLH LRPGHIYNNG AGKQALKNID SLGLFSTVEV  120
EPRPDETNQG GVIVAIKLKE HDPKSAQVIT DWSIVSGSQG TPTLASIQPG GTVSFEHHDI  180
CGLKRSLIGS VTTSNLLNPE DDLSFKLEYA HPYLDGVDNR SRNRTFKISC FNSRKLSPIF  240
VAGPNMYEAP PIWSFTKQSK FTYGLVVEEI TTRDENNNIC THGSRQLPSG ALSMIGPPTT  300
LSGTGVDRMA FLQANITRDN TEFVNGATIG DRCIFQYSEQ SFLVGYRWIK ASVLEARTLF  360
NRHQLTVTKF INLNKQEKGP RKPPPAVLAL HGRYAGCVGD LPSYGAFALG GPHSVRGYGM  420
GELGASRNLL EVATELSVPI TVKNRHTQVY AFAEHGTDLG SSKDVKGNPT EFFRRVGHGS  480
SYGVGVKLGA VRAEYAVDHN AGTGAFFLRF ERNPGLNLRD LAVVKLTMEG AGRIPGMARH  540
ILPARMMVVN VRMGSKVMES TNAKRRAPIP TPSSSSPSSL PSETTRPPQN LRFFSETEMA  600
LDSVPSYPSD LGSSRARTPQ QQRVSPRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF  660
PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSSKIVG STPDSTVQSR  720
KAISICFNSH GQTGEQPTFL SSSASLLSPS MQSYSSNQQP DMNTYSRQFQ WADTSSSTSN  780
APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIESLT PSLDPLKGAK LLILLGTRAF  840
LLPRYMDSEI RAIMAQYMPL DNQGDVPNHS HHIEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5uay_A	9e-37	1	140	178	312	Protein TOC75-3, chloroplastic
5ubc_A	9e-37	1	140	178	312	Protein TOC75-3, chloroplastic
5ubc_B	9e-37	1	140	178	312	Protein TOC75-3, chloroplastic
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073243	0.0	AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616430.1	0.0	protein TOC75, chloroplastic-like
Refseq	XP_025877150.1	0.0	protein TOC75, chloroplastic-like
Refseq	XP_025877151.1	0.0	protein TOC75, chloroplastic-like
Swissprot	Q84Q83	0.0	TOC75_ORYSJ; Protein TOC75, chloroplastic
TrEMBL	A0A0E0BN09	0.0	A0A0E0BN09_9ORYZ; Uncharacterized protein
STRING	OGLUM12G01270.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-21	WRKY DNA-binding protein 55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]