PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G01250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 37253.5 Da PI: 5.8178 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.6 | 2.5e-23 | 141 | 202 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K+++g++f+rsY+rCt++ gC+++k+++++ ++dp ++++tY++eH+++ OGLUM12G01250.1 141 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRdnrGCQATKQIQQKdNNDPPMFQVTYSNEHTCT 202 8***************************99999*******8751679*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-23 | 133 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-21 | 134 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-33 | 140 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.282 | 141 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-25 | 141 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAVTESACLS YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL 60 SVMNQPHASS SAAAAAVPVM SMIKAEAATP ANSSSPAADV AADNHVVGKP RRSSSAAKRR 120 RINGEEYKSS SWSQFTPVPH EDGFQWRKYG EKKIQGTHFT RSYFRCTYRD NRGCQATKQI 180 QQKDNNDPPM FQVTYSNEHT CTTTRLINNI NNPAALHNLT ANPNGHHDSD DDDTIFTKMI 240 KQEEQAAWLP PPPPADLATI SNNFDETPGL HVCQEVPPSS SNSSVISHYA DEFDHHQMLE 300 TTVMEEALGL GAYLDDPYFY DPNLLLIYES LMNCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 141 | 201 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 121 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616433.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0E0BN07 | 0.0 | A0A0E0BN07_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G01250.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5045 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-20 | WRKY family protein |