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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM12G00050.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | WRKY | ||||||||
| Protein Properties | Length: 1732aa MW: 188143 Da PI: 7.6635 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 97 | 1.2e-30 | 1599 | 1655 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k
OGLUM12G00050.3 1599 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 1655
9***************************************.***************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50222 | 11.835 | 213 | 248 | IPR002048 | EF-hand domain |
| SuperFamily | SSF47473 | 2.12E-17 | 218 | 348 | IPR011992 | EF-hand domain pair |
| Gene3D | G3DSA:1.10.238.10 | 1.8E-14 | 219 | 346 | IPR011992 | EF-hand domain pair |
| PROSITE pattern | PS00018 | 0 | 226 | 238 | IPR018247 | EF-Hand 1, calcium-binding site |
| PROSITE profile | PS50222 | 6.201 | 315 | 350 | IPR002048 | EF-hand domain |
| PROSITE profile | PS50920 | 17.3 | 378 | 458 | IPR018108 | Mitochondrial substrate/solute carrier |
| Pfam | PF00153 | 1.2E-11 | 379 | 459 | IPR018108 | Mitochondrial substrate/solute carrier |
| Gene3D | G3DSA:1.50.40.10 | 8.8E-58 | 379 | 643 | IPR023395 | Mitochondrial carrier domain |
| SuperFamily | SSF103506 | 4.58E-57 | 379 | 638 | IPR023395 | Mitochondrial carrier domain |
| PRINTS | PR00926 | 9.7E-5 | 383 | 396 | IPR002067 | Mitochondrial carrier protein |
| PRINTS | PR00926 | 9.7E-5 | 396 | 410 | IPR002067 | Mitochondrial carrier protein |
| PROSITE profile | PS50920 | 14.79 | 467 | 549 | IPR018108 | Mitochondrial substrate/solute carrier |
| Pfam | PF00153 | 1.5E-6 | 472 | 549 | IPR018108 | Mitochondrial substrate/solute carrier |
| Pfam | PF00153 | 5.1E-20 | 557 | 645 | IPR018108 | Mitochondrial substrate/solute carrier |
| PROSITE profile | PS50920 | 19.703 | 558 | 643 | IPR018108 | Mitochondrial substrate/solute carrier |
| PRINTS | PR00926 | 9.7E-5 | 567 | 589 | IPR002067 | Mitochondrial carrier protein |
| Gene3D | G3DSA:2.20.25.80 | 8.0E-27 | 1592 | 1656 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 23.72 | 1592 | 1656 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 8.5E-24 | 1594 | 1656 | IPR003657 | WRKY domain |
| SMART | SM00774 | 1.7E-34 | 1597 | 1655 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.0E-23 | 1599 | 1654 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0055085 | Biological Process | transmembrane transport | ||||
| GO:0009941 | Cellular Component | chloroplast envelope | ||||
| GO:0016021 | Cellular Component | integral component of membrane | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0005509 | Molecular Function | calcium ion binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1732 aa Download sequence Send to blast |
MSRSEHPMVA AARAALAHLQ LPLPPAPAGS NMDHHLLPHF LHRSPPSPCF LLLRTQHKPK 60 PPQPQLHLLL CTAFDSLAHS LQEVLDKHKP KLHLDTLFLH GNLPFAKVGV PPPPPPPAPL 120 LSPPSVSAHH QHQPATPTET ETEDTAANDS PPPRTLPVRL LNIPVDRLRS TLSTLSLTEL 180 IDLVPHLVAR SLPSPDTHPD KKKLFSVHHF FRYAEFEGKR FFEELDRDGD GQVTLEDLEV 240 AMRKRRLPRR YARDFLRRTR SNLFSKSIGW KQFLSLMEQK EPTILRAYTT LCLSKSGTLH 300 KNQILTSLKG AGLPANEDNA AAMLRYLNAD SEESISYSHF RNFMLLLPSE RLEDDPRNIW 360 FEAATLVAVP PPVEISTGSV LKSALAGGLA SALSTSVMHP IDSMKTRVQA SSLSFPDLIS 420 TLPQIGLRGL YRGSIPAILG QFSSHGLRTG IFEASKLVLK SVAPTLSDIQ VQSLSSFCST 480 ILGTAVRIPC EVLKQRLQAG IFNNVGEAIV GTMQKDGPKG FFRGTGATLC REVPFYVAGM 540 CLYAEAKKAA QHVLNRDLEP WETIAVGALS GGLAAVVTTP FDVMKTRMMT APPGTPVSMQ 600 LIVFSILRNE GPLGLFKGAI PRFFWIAPLG AMNFAGYELA KKAMIQTESD SADCNKENNI 660 SQNRRHVLDC QTPCEGKGAA TSKKRKNKPA GGFNLRKSIA WNPAFFTEQG VLDNTELSML 720 TGSQVKATRS PASGFSSTFS PLSRFGKSSN TSVLKEIGEN SRGKFPSKCL SAENKGRKLF 780 ASSKASEQDE RKALAGTQDK RSAKAIQKIP KKSEPSPSVV SRSRSTSSVT NVPKPTTRPA 840 TVTSECTHKV EGLPLKSKTE RSSVTKSSGP TIGKDMVPPT VTTICQETNG SGKCETFSPY 900 SQDNPSSSVV APARISAKPS ALRMPSPSVG FFTQGKASVS HSGTAQRNPE RCFSGNISSV 960 KPPRYKQPVD PKSRFHLTKQ LPTNFSAASS LPVQSATSDS TPNVLASSLP GVEDATVCSL 1020 KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS 1080 VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN 1140 GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD 1200 SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC 1260 DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD 1320 TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTISKDHLK NLVPFTEEWL AVMEAFGEEV 1380 LEQKTGAVQN SPTDKAAPEP SPWSPVKRKA QDVGPFDCTK YSKNVRTKQQ QQPTVLAIDS 1440 FCAALESLIV SVLAPFNSTS FSPFDCIYQS LPVTAQDFGT WCDMQSHKKV AAVKPVASRP 1500 SSRLRSFSML QEDSTAIDSP RVTSLEEIIL RRTKATRFTH PLSNSSTEIA ATRLEDSGTH 1560 TTCDQKKADT GKGACWDNLT VSQSVRKPNV SAKNSLSYDG YSWRKYGQKQ VKGSEFPRSY 1620 YKCTHPTCPV KRKVEMTPDG RIAEIVYNGE HNHPKPHPPR KPTLSTSVET LVATNDAGLE 1680 NKLEGCDQAI GSDAVVEALR GGCHCLDGFR NGNEISDCKK RYAYAVIFIQ EK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2lck_A | 2e-17 | 385 | 645 | 6 | 287 | Mitochondrial uncoupling protein 2 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK068622 | 0.0 | AK068622.1 Oryza sativa Japonica Group cDNA clone:J013154A11, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0E0BMK1 | 0.0 | A0A0E0BMK1_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM12G00050.3 | 0.0 | (Oryza glumipatula) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G37260.1 | 6e-27 | WRKY family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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