PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G00050.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1480aa    MW: 160375 Da    PI: 6.8045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G00050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-3013471403360
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60  
                       Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  OGLUM12G00050.1 1347 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 1403
                       9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5022210.63679114IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.105.0E-685177IPR011992EF-hand domain pair
SuperFamilySSF474734.34E-685175IPR011992EF-hand domain pair
PROSITE patternPS00018092104IPR018247EF-Hand 1, calcium-binding site
PfamPF001531.8E-9202268IPR018108Mitochondrial substrate/solute carrier
SuperFamilySSF1035062.09E-52202444IPR023395Mitochondrial carrier domain
Gene3DG3DSA:1.50.40.101.5E-48202449IPR023395Mitochondrial carrier domain
PRINTSPR009266.1E-5206219IPR002067Mitochondrial carrier protein
PRINTSPR009266.1E-5219233IPR002067Mitochondrial carrier protein
PROSITE profilePS5092014.79273355IPR018108Mitochondrial substrate/solute carrier
PfamPF001531.2E-6278355IPR018108Mitochondrial substrate/solute carrier
PfamPF001534.2E-20363451IPR018108Mitochondrial substrate/solute carrier
PROSITE profilePS5092019.703364449IPR018108Mitochondrial substrate/solute carrier
PRINTSPR009266.1E-5373395IPR002067Mitochondrial carrier protein
PROSITE profilePS5081123.7213401404IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-2713401404IPR003657WRKY domain
SuperFamilySSF1182907.06E-2413421404IPR003657WRKY domain
SMARTSM007741.7E-3413451403IPR003657WRKY domain
PfamPF031068.7E-2413471402IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0009941Cellular Componentchloroplast envelope
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1480 aa     Download sequence    Send to blast
MPSSPTSASS QSLAHHQPEE PLATTHTHCH LFACSTSLCS TLSTVSLTDL IDLVARSLPS  60
PHTHPYKKKL FSIHDFFRYA EFEGKRFFEE LDRDDDGQVT LEDLEVAIRK RRLPRRYARD  120
ILRRTRRGAN NNAGIHHVAF RPMKIMLRYL NADSEESISY SHFRNFMLLL PSERHEDDPR  180
NILFEAATLV AVPPPVEIST GSVLKSALAG GLASALSTSV MHPIDSMKTR VQASSLSFPD  240
LISTLPQIGL RGLYRGSIPA ILGQFSSVAP TLSDIQVQSL SSFCSTILGT AVRIPCEVLK  300
QRLQAGIFNN VGEAIVGTMQ KDGPKGFFRG TGATLCREVP FYVAGMCLYA EAKKAAQHVL  360
NRDLEPWETI AVGALSGGLA AVVTTPFDVM KTRMMTAPPG TPVSMQLIVF SILRNEGPLG  420
LFKGAIPRFF WIAPLGAMNF AGYELAKKAM IQTESDSADC NKENNISQNR RHVLDCQTPC  480
EGKGAATSKK RKNKPAGGFN LRKSIAWNPA FFTEQGVLDN TELSMLTGSQ VKATRSPASG  540
FSSTFSPLSR FGKSSNTSVL KEIGENSRGK FPSKCLSAEN KGRKLFASSK ASEQDERKAL  600
AGTQDKRIPK KSEPSPSVVS RSRSTSSVTN VPKPTTRPAT VTSECTHKVE GLPLKSKTER  660
SSVTKSSGPT IGKDMVPPTV TTICQETNGS GKCETFSPYS QDNPSSSVVA PARISAKPSA  720
LRMPSPSVGF FTQGKASVSH SGTAQRNPES LPVQSATSDS TPNVLASSLP GVEDATVCSL  780
KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS  840
VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN  900
GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD  960
SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC  1020
DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD  1080
TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTIKEWLAV MEAFGEEVLE QKTGAVQNSP  1140
TDKAAPEPSP WSPVKRKAQD VGPFDCTKYS KNVRTKQQQQ PTVLAIDSFC AALESLIVSV  1200
LAPFNSTSFS PFDCIYQSLP VTAQDFGTWC DMQSHKKVAA VKPVASRPSS RLRSFSMLQE  1260
DSTAIDSPRV TSLEEIILRR TKATRFTHPL SNSSTEIAAT RLEDSGTHTT CDQKKADTGK  1320
GACWDNLTVS QSVRKPNVSA KNSLSYDGYS WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR  1380
KVEMTPDGRI AEIVYNGEHN HPKPHPPRKP TLSTSVETLV ATNDAGLENK LEGCDQAIGS  1440
DAVVEALRGG CHCLDGFRNG NEISDCKKRY AYAVIFIQEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-16134714041674WRKY transcription factor 1
2lck_A1e-142084516287Mitochondrial uncoupling protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1192900.0AK119290.1 Oryza sativa Japonica Group cDNA clone:001-130-D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BMJ90.0A0A0E0BMJ9_9ORYZ; Uncharacterized protein
STRINGOGLUM12G00050.30.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.16e-27WRKY family protein