PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G14080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 787aa    MW: 82328.6 Da    PI: 6.5373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G14080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.7e-1304167861374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevs 88 
                      lv+lLl+cA+ vs+gd+ +a + L  l+  asp gd+mqR+a++f+ ALaarl+  +s ++++ +p++++         s e+l++++++++++
  OGLUM11G14080.1 416 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAApypfppSPETLKVYQILYQAC 509
                      68****************************************************9888888888888888777899****************** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+       +++etg+ La++A++l+vpfef++ +
  OGLUM11G14080.1 510 PYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAA 599
                      *************************************************************....99*************************99 PP

             GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      a+rle l++ +L+ + gEalaVn v +lhr++  s +       +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p
  OGLUM11G14080.1 600 ADRLERLRPAALHRRVGEALAVNAVNRLHRVP--SSH----LLPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFP 687
                      99*****************************9..333....4459************************************************* PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      +es +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e  GF++vpls  a+ q + ll  ++ +dgyr+ e+sg+l+lgW+dr++++
  OGLUM11G14080.1 688 AESTARMKVEQSLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIA 781
                      ********************************************************************************************** PP

             GRAS 370 vSaWr 374
                      +SaWr
  OGLUM11G14080.1 782 ASAWR 786
                      ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.625390765IPR005202Transcription factor GRAS
PfamPF035149.4E-128416786IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF  60
DGGGGGGGDI DDVEIQSPDI ALWESIFADQ IGVSGAGADF LLSMSSAAAS PRRDFMACSP  120
KRDYMVTTSS PKRDYMVTSS PKRDYMVSSP KREYMVTSPR REMATSPRRA TFSNLYTSSH  180
GGGGGGGHHL HHQSYVHGGG MEGGGGGHGA QPQYGGLAGH GKGKAQSPLH KVYINNVGGG  240
SGGGGVKSNT PSTLSCSSSY VVHGGESGLP SLPSMDPFLE EGYLGSYQLP EKAAGGVGGG  300
GGGDINGSGA SASVVTAPAS SQLLPTLSEC LAMPEPAAYR GGGDEVVAAA MAVAGELPVG  360
AFVQPELYYG GGGEFGGEGM TPPLQHQMAA DSSLHSMLGS VIQSEAEQEQ DSGLQLVHLL  420
LACADLVSKG DHPAALRHLH LLRRVASPLG DSMQRVASHF ADALAARLSL LSSPTSASPS  480
PRAAAAAAPY PFPPSPETLK VYQILYQACP YIKFAHFTAN QAIFEAFHGE DRVHVVDLDI  540
LQGYQWPAFL QALAARPGGP PTLRLTGVGH PPAAVRETGR HLASLAASLR VPFEFHAAAA  600
DRLERLRPAA LHRRVGEALA VNAVNRLHRV PSSHLLPLLS MIRDQAPKII TLVEQEAAHN  660
GPYFLGRFLE ALHYYSAIFD SLDATFPAES TARMKVEQSL LAPEIRNVVA CEGAERVARH  720
ERLERWRRLM EGRGFEAVPL SAAAVGQSQV LLGLYGAGDG YRLTEDSGCL LLGWQDRAII  780
AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-8442378526378Protein SCARECROW
5b3h_A2e-8442378525377Protein SCARECROW
5b3h_D2e-8442378525377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363770.0AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377590.0AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616711.10.0DELLA protein RHT-1
TrEMBLA0A0E0BJD50.0A0A0E0BJD5_9ORYZ; Uncharacterized protein
STRINGOGLUM11G14080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-91RGA-like 1