PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G05230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 444aa    MW: 45670.8 Da    PI: 7.2137
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G05230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18376409134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  OGLUM11G05230.1 376 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 409
                      *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17370420IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231370408IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-14372433No hitNo description
Gene3DG3DSA:3.30.50.102.1E-15374409IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.02E-16375431No hitNo description
PfamPF003201.8E-16376410IPR000679Zinc finger, GATA-type
PROSITE patternPS003440376401IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV  60
ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG  120
KDMETEALDV KPVVGVGAGG AMGAHVAGGA MGAHVAGGVG APGAFPESKQ LVPWPCAVGA  180
GASAPGAAPD NRLLALPDVR FDALTAEGAA PGGERGKTIP DSVSKNGLPT LPGVRSATPT  240
APPATPFRLE WDHAAAPSSS ATTTPSDSSL SSPPSLTSAF PRIARVFPSR TKPRRRRTLR  300
RQHWSLICPL HLVPVAAAAA AADDDAAARG KSISELNASA SAAADAPSIN DGGGGSYNRR  360
VVGRQRNRQV RKDRRCSHCG TSETPQWRMG PDGPGTLCNA CGIRSKMDRL LPEYRPSTSP  420
SFNGDEHSNR HRKVLKLREK KMRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286440.0AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BG740.0A0A0E0BG74_9ORYZ; Uncharacterized protein
STRINGOGLUM11G05230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-26GATA transcription factor 7