PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G04510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 455aa    MW: 47196.5 Da    PI: 8.5757
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G04510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.91.1e-481232792137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+as+sss++aa+++
  OGLUM11G04510.1 123 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPFH 216
                      789******************************************************************9999********************* PP

              TCP  95 akskksqksaasalnlakesr....................akarararertrekmriknkln 137
                      + ++++q++ a++l ++++++                    a + +r+r+r++++ +++++++
  OGLUM11G04510.1 217 HLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 279
                      ******************9999********************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349129183IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-37129238IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MIKDLRTLES WTKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA QGGANTMPAP ASFMGSLAIV PAAAAPGGGG GQVQAAAAPV ASSEKKAVVA  120
AGAGAKRPTK DRHTKVEGRG RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI  180
VAATGTGTIP ANFSSLAVSL RSAASHSSSP RAAPFHHLQQ QQQHDVAAML GFHHHHHQLL  240
PPPPPHQHPE PTPQDPGAGE FMRKRYREAD DLFKDTSRQD PVDGATGEAE QKARAAAATA  300
APPPTAPSAM WAVGPNTTGA TAAFWMQPAW AFPPGAGAAG NTVQAPLQFM SRSSFPTAMN  360
VTMADNNNSS NNNLGMLAAL NAGGGGRSGE HQHQHEGQSP AEMDHQRRAN GGGGEAGGAA  420
SSQFRMIINQ FAIVRGFTSP VIYLNHENPI KVAEN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718040.0AB071804.1 Oryza sativa Japonica Group mRNA for transcription factor PCF3, partial cds.
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.11e-165transcription factor PCF3
SwissprotQ53PH20.0PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0BFZ00.0A0A0E0BFZ0_9ORYZ; Uncharacterized protein
STRINGOGLUM11G04510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.15e-37TCP family protein