PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G00880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 329aa    MW: 35597.6 Da    PI: 6.3031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G00880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-22131191359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  OGLUM11G00880.1 131 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 191
                      9************************9888889**********98776537899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-24114192IPR003657WRKY domain
SuperFamilySSF1182902.35E-21122191IPR003657WRKY domain
SMARTSM007742.8E-31129192IPR003657WRKY domain
PfamPF031063.2E-22131191IPR003657WRKY domain
PROSITE profilePS5081119.52131172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TPTTPASHST TALAGDGECC LPPGLTTTTT  60
VSGGGRRRGR KRVNRDNDNV KLLLQADDDQ EAVIADHGDA NAKPLPNFTK TRRRKQQATT  120
STMVTTVPDF DGYQWRKYGQ KQIEGAMYPR SYYRCTNSTN QGCLAKKTVQ RNGGGGAAGY  180
TVAYISEHTC KSIEPSLPPV ILDTTVRTTN NHQQPAAAES PAATSSSSSN MVMTSSETGN  240
WSGQHGAYAC RQMIAADEEY CCWDTPATTT TTSGSNGGNS TCAEDIELLS RPIRSPMHIA  300
AEGNWMDDLL LVTDGLVDIS NSSITHFLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-141311911069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115TRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.10.0probable WRKY transcription factor 33
TrEMBLA0A0E0BEM50.0A0A0E0BEM5_9ORYZ; Uncharacterized protein
STRINGOGLUM11G00880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-15WRKY DNA-binding protein 46