PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G00870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 320aa    MW: 35920.1 Da    PI: 6.8109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G00870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.82.2e-18146200356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++k+s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OGLUM11G00870.1 146 DGHQWRKYGQKHIKNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 200
                      9**************************99999********987.43332.2344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-21139214IPR003657WRKY domain
SuperFamilySSF1182901.83E-18140214IPR003657WRKY domain
SMARTSM007742.8E-30144216IPR003657WRKY domain
PfamPF031061.3E-22146214IPR003657WRKY domain
PROSITE profilePS5081115.158146186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKNSSNKRSL VADQWHPSSV CCDHRAALRE IAKGQSLVTQ LRAIVLPALH SDERCDLAAQ  60
MLEGILDCSR KAISQLQLLL SSPHDDDHHH HVDDKRRVRK IISSSDDDDH CSSKAAEDHN  120
AKPLRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHIKN SKHPRSYYRC TYRQEEKCKA  180
TKTVQQREDL HHANSYNGDH PIMYTVVYYG QHTCCKGPAA LADDHVVVEA SQISTDSHCQ  240
SPSSSSDLQA AAVHAGNSSQ CSNISVTCSS SVVVEDCNKL LDMMPAADEL TADVLLFDMT  300
AYAPLDLDIN WEMDTNALWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141462141068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891750.0AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616436.10.0probable WRKY transcription factor 54
TrEMBLA0A0E0BEM40.0A0A0E0BEM4_9ORYZ; Uncharacterized protein
TrEMBLI1R2M80.0I1R2M8_ORYGL; Uncharacterized protein
STRINGOGLUM11G00870.10.0(Oryza glumipatula)
STRINGORGLA11G0202000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70