PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G00850.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 280aa MW: 31631.5 Da PI: 6.3391

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G00850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.5	3.2e-19	122	186	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 +Dg++WrKYGqK + ++++rsYYrC+ + gCp++k v++ ++ + k++++ Y g+H+++ OGLUM11G00850.1 122 NDGHQWRKYGQKRISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186 8***********************9887889****99876522226899*****995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-22	107	186	IPR003657	WRKY domain
PROSITE profile	PS50811	14.779	116	163	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-19	117	186	IPR003657	WRKY domain
SMART	SM00774	2.0E-28	121	187	IPR003657	WRKY domain
Pfam	PF03106	3.2E-22	122	186	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPILPSD NEQAKLALQL LGDILSCSDK 60 AISMLELGGD TKKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP 120 HNDGHQWRKY GQKRISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY 180 GQHTCRGDGI ADPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDERFEN LCMVQNMPEY 240 LIDFELERAF EFIVNSPLGS EHWTFDDSIR CEHSPICIWG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102093	0.0	AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616437.1	0.0	probable WRKY transcription factor 67
TrEMBL	A0A0E0BEM1	0.0	A0A0E0BEM1_9ORYZ; Uncharacterized protein
STRING	OGLUM11G00850.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13325	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	4e-19	WRKY DNA-binding protein 46