PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07640.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 577aa    MW: 66377.2 Da    PI: 6.2718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07640.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.92.8e-081512410128
              NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFsk.rdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                      +d e++  +L+++ + ++l+  +++  vd++ ++P+d p       + w+   + ++  y  +++  r++k+gyWk      ++ + +++  g+
  OGLUM10G07640.3  15 SDTEII-MFLAERKTWDPLPQ-NILVGVDLTMIDPRDSP------GTLWFLNWPdNQLCYDDENNVFRKAKNGYWKCVDA-CRIQT-GTSILGV 98 
                      689999.88888888899888.889************99......3456554440444566788889999******8866.56766.8999*** PP

              NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                      k  L f++g++p g+++  +m ey +
  OGLUM10G07640.3  99 KLCLEFHEGQTPCGTRSGLMMYEYLI 124
                      ************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-244145IPR003441NAC domain
PROSITE profilePS5100519.4166145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVLPPLGIAV GDSWSDTEII MFLAERKTWD PLPQNILVGV DLTMIDPRDS PGTLWFLNWP  60
DNQLCYDDEN NVFRKAKNGY WKCVDACRIQ TGTSILGVKL CLEFHEGQTP CGTRSGLMMY  120
EYLIEQNDEL NLPQAYKSLC RMFLQEDRKI VEDEHISLNL GVHHNFLGSY SQYLAEIQRQ  180
NMVMNSQTKK VSSSENWMNE KARNGQAQGS TDKRFLIFGV YVTRLNNYLE LMIEEPRFSS  240
IAYVRLDSQV KKLDKEYTSA MDLSSSLHQM LQKLNLRVQD EEVWVSQLGS NLQASFRKIM  300
DTSSEIGKLE DEVLQLKVDI AEFAPGEVTS CAVYEMIKTL QIVELFMNNS TRHLKLIDGI  360
NSEMREFGSI FNGKVRCLVR FARYQQTIME KSTQIINFLG DIRAKVDKMT QMYGLSEVVP  420
IDSNQFIEGS FNADAYGTCS YYATLSSVES LYKREYASYP TILKDKIGQP DEFLVNLSRA  480
QLEDIVEDFY TRHKVKGSKR LNVCLDKMKN EGVISEESYM NPQAQMRMKE HIFLTKIKKV  540
IESHIMDGKV LIASFRITTG CYLIKSTKFQ KKIPNMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0645520.0AK064552.1 Oryza sativa Japonica Group cDNA clone:002-112-C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612853.10.0uncharacterized protein LOC4348481 isoform X7
TrEMBLA0A0E0B9Q20.0A0A0E0B9Q2_9ORYZ; Uncharacterized protein
STRINGOGLUM10G07640.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-12NAC domain containing protein 83