PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM10G05830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 27632.9 Da PI: 7.29 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 25 | 3.8e-08 | 53 | 96 | 20 | 59 |
S-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 r YYrC+++ +C+++k v++++ dp + +tY H+++ OGLUM10G05830.1 53 IYRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 96 5699******99999*******9865269************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.83E-9 | 47 | 97 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-9 | 49 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-8 | 49 | 97 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-11 | 54 | 95 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MASRHQLQTM QFTDPASRSP RPGGGVHGQP QPTPMSSPFS SRKPRRWCKT VAIYRLYYRC 60 SYRDDRNCMA TKVVQQENDA DPPLYRVTYI HPHTCNPSPP APTPAHVFTE PPPAKAEEHH 120 AVLFRFSSTA GGHTPNNAVH RQQWQPAAAT MAAGAQAQLS MTMSDDEREQ PPAAIRSAPP 180 ARRLSMFRAV VDGLRQMRSS APPTPSSSMV VDDGWDTFSS FDLDTCEFSV DDELLCGDHM 240 YFPDSMQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099774 | 0.0 | AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613415.2 | 1e-148 | probable WRKY transcription factor 32 | ||||
TrEMBL | A0A0E0B915 | 0.0 | A0A0E0B915_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM10G05830.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16993 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 4e-11 | ABA overly sensitive mutant 3 |