PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G02950.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 138aa    MW: 15194.4 Da    PI: 10.8662
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G02950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-126643597
                     EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      l+l++++g + ++++  +   ++ ++t+GWkeF++a gL++g++++F++ +rs++  +v+++
  OGLUM10G02950.1  6 SLRLKTSHGLKIKIRI--KEAASTLYMTTGWKEFAEATGLETGETILFRMPSRSKA--RVMLL 64
                     599*************..999999*************************8777666..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.21167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-10567IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-10566IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-10665IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MQHGDSLRLK TSHGLKIKIR IKEAASTLYM TTGWKEFAEA TGLETGETIL FRMPSRSKAR  60
VMLLNRQCLT RCPVKTPSTT SSDKNRSLSP SDQLTRASTC AHPSTSKSIP PLRNGTGSTK  120
RSIADTSFCH QLKLTAEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877230.0AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBankAC1166000.0AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XGM64e-96Y1086_ORYSJ; Putative B3 domain-containing protein Os10g0158600
TrEMBLA0A0E0B8252e-96A0A0E0B825_9ORYZ; Uncharacterized protein
STRINGOGLUM10G02950.13e-97(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3120544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.19e-10B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]