PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G17660.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 414aa MW: 42582.2 Da PI: 4.9598 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.3e-35 | 39 | 129 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgFkk+ ++ weF+++ F++g+k+ll+ OGLUM09G17660.2 39 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFKKIVPDR---------WEFANDCFRRGEKRLLC 123 9****************************************************************999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k OGLUM09G17660.2 124 DIHRRK 129 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.4E-38 | 31 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-58 | 35 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.84E-35 | 36 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.2E-20 | 39 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.7E-32 | 39 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-20 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MAEQGAGEAD ASGGEPPPAA VMTAAAEALA GQRSLPTPFL TKTYQLVEDP AVDDVISWNE 60 DGSTFVVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFK KIVPDRWEFA NDCFRRGEKR 120 LLCDIHRRKV VAAAAAAPPP PSPGMATAAA AVASGAVTVA AAPIPMALPV TRAGSPAHSS 180 EEQVLSSNSG SGEEHRQASG SGSAPGGGGG GSASGGDMGE ENERLRRENA RLTRELGHMK 240 KLCNNILLLM SKYAATQHVE GSAGISSIAN CSGESSEAVP PPPPLPPAIL DLMPSCPALA 300 TAAAAAGLAI DGEPDPSARL FGVSIGLKRT RDDAAAAADE DGGGEDQAEH GGADVKPEAA 360 DPHPAGGGGG SSTEASPESH PWPIYRPTPM YHAVRPTCNG PDRAGSDQDG SSSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-26 | 29 | 128 | 11 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106525 | 0.0 | AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876147.1 | 0.0 | heat stress transcription factor B-2c isoform X5 | ||||
Swissprot | Q652B0 | 0.0 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
TrEMBL | A0A0E0B5K1 | 0.0 | A0A0E0B5K1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G17660.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 2e-59 | HSF family protein |
Publications ? help Back to Top | |||
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