PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G17420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 25536.2 Da PI: 5.3634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 45 | 97 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p ++g +r +lg++ tae Aa+a++aa+ +l+g OGLUM09G17420.1 45 PVYRGVRRRGGAGRWVCEVRVPGKRG--ARLWLGTYVTAEAAARAHDAAMIALRG 97 68*******************95544..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-13 | 45 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-16 | 46 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-26 | 46 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 46 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.85 | 46 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDMAGHEVNS SSSSSGAESS SSSSGRQQYK KRPAGRTKFR ETRHPVYRGV RRRGGAGRWV 60 CEVRVPGKRG ARLWLGTYVT AEAAARAHDA AMIALRGGAG GGGAACLNFQ DSAWLLAVPP 120 AAPSDLAGVR RAATEAVAGF LQRNKTTNGA SVAEAIDEAT SGVSKPSPLA NNAGSSETPG 180 PSSIDGTADT AAGAALDMFE LDFFGEMDYD TYYASLAEGL LMEPPLAATA LWDNGDEGAD 240 IALWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006859 | 0.0 | AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611305.1 | 1e-174 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z388 | 1e-175 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 1e-175 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | A0A0E0B5H1 | 1e-177 | A0A0E0B5H1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G17420.1 | 1e-177 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 6e-19 | C-repeat-binding factor 4 |