PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G13890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 38232.2 Da    PI: 6.508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G13890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-11137193154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P+++      +   + a+i+  A++++k+L
  OGLUM09G13890.1 137 QRMTHIAVERNRRKQMNEYLAVLRSLMPPSYaqrYCLCAQGDQASIVGGAINFVKEL 193
                      79***************************7545533445557788888888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-13135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-13135198No hitNo description
SuperFamilySSF474591.07E-14136211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8137193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-8142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGSN WDAAACSSML  60
LHGFQELEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGG HQEDQAAVAA AATAVQAGRR  120
KRRRARAAKN KEEVESQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYAQR YCLCAQGDQA  180
SIVGGAINFV KELEQLLQSL EARKSSRQCA AHDAAAAAAP FASFFTFPQY SMSAAAAAAA  240
PVAPVVNEVH GRDDGGAGTA EAEASGSKPS AVADVEVTMV ESHANLRVLS RRRPRQLLRL  300
VVALQGHRLT VLHLNMTSAG HMVLYSFSLK VEDDCQLTSV DEIATAAHQI IEKIQEEQGC  360
SLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.10.0transcription factor bHLH94
RefseqXP_015612233.10.0transcription factor bHLH94
SwissprotQ9C7T49e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0B4360.0A0A0E0B436_9ORYZ; Uncharacterized protein
STRINGOGLUM09G13890.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]