PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G12850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 282aa    MW: 31513.6 Da    PI: 10.1369
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G12850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.77.1e-3333130298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+++L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l+k
  OGLUM09G12850.1  33 RPSRVWSQADELIILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQLAK 125
                      679************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  OGLUM09G12850.1 126 KVWGT 130
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-2735129IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPPPRRSAG GSEPRAKRPR SAAVASSAEH SKRPSRVWSQ ADELIILRGL ITYRTKRGVL  60
PGSTQDIGKL HSYIRGQLSA KVSTTQLSDK VRRLKQKYQM LATRAKTGKE VFPTPHDHNI  120
YQLAKKVWGT MSTAGEGGGS GYDNADAGES EEEQYGRESD DDMESGRDNR HRKNQRSVPV  180
TMANGNGTGI GAVNAIVRGR SEFEKGKDVY PYLWETVEEL SSQHPTGAVF KKAFELLEGS  240
KAQVMEEKLR KFRLTEMRQQ LRRMDLMKDT LSMVLDALEM AD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0QS760.0A0A0E0QS76_ORYRU; Uncharacterized protein
TrEMBLI1QPF90.0I1QPF9_ORYGL; Uncharacterized protein
STRINGORUFI09G13330.10.0(Oryza rufipogon)
STRINGORGLA09G0093800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-15DNA-binding storekeeper protein-related transcriptional regulator