PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G06630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 359aa MW: 37572.8 Da PI: 6.5628 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.3 | 5.7e-27 | 125 | 185 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDg++WrKYGqKe+ g+++pr+YYrCt++ gC+++k+v+r++ed +v++++Y+geH++ OGLUM09G06630.1 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRnsqGCMATKQVQRTDEDATVFDVIYHGEHTC 185 59***************************98889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 114 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.114 | 120 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-25 | 121 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.1E-39 | 125 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 126 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS 60 GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV 120 ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRNSQGCM ATKQVQRTDE DATVFDVIYH 180 GEHTCVHKAV AAGAGKPETD ANAAAESRLH DLSSGLTVKI EGLTAPPQQQ QGGGGWNAMP 240 PFCLSSPVSG LAPPDQHNPF SAPSTPENRL AAAASSAASP ATSDSMAAAP FHQAAAGGGD 300 AAWRDAELQE VVSALVAATT TTATAQPAPA AAMVDADLSA LDAFEFDPGF TIDITSFFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-22 | 125 | 185 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676930 | 0.0 | AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651250.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A0E0B1K1 | 0.0 | A0A0E0B1K1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G06630.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-32 | WRKY DNA-binding protein 46 |