PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G03800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1523aa    MW: 173751 Da    PI: 9.3492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G03800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-111081841698
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  OGLUM09G03800.1 108 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILDFGYSGNSHF--KVQIFN 184
                      4788999977744.4..35579**************..**********************************9999..999986 PP

2B354.81.7e-17229320199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+++ +  k   l +pkkfa++  gk   + +++le ++g+ ++v++  +  +++ vl++GW +F +  +Lk gD +vF ++g+s f  +v
  OGLUM09G03800.1 229 FFKVMMSVSDVKDE-LAIPKKFAANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWANFSSTYQLKHGDLLVFIHSGHSHF--KV 315
                      89***999999987.********888666..3446***************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+ 
  OGLUM09G03800.1 316 LIFDP 320
                      99885 PP

3B336.31e-11444526992
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       + +sg lv+ k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  OGLUM09G03800.1 444 TSVASGSLVFCKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 526
                      4556778***********888..4558888887777*******..8888888*************************8876444444 PP

4B339.21.2e-12588686199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++v+ +s+ ++++ l+++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ + 
  OGLUM09G03800.1 588 FLSVMRSSNCTRQSSLCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTV 679
                      7889999999999*************544345..5666663455778888877999999***************************99999999 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++rk
  OGLUM09G03800.1 680 TVHIIRK 686
                      9999987 PP

5B360.43.1e-19715802197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v
  OGLUM09G03800.1 715 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 799
                      67777..6678887.********9999994..559***************..**********************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OGLUM09G03800.1 800 WIY 802
                      655 PP

6B340.54.8e-139311012893
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  OGLUM09G03800.1  931 KASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 1012
                       556677999**********888767..56665536678899999..4444434*************************8887666..3 PP

7B334.92.7e-11108911691396
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3   13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96  
                       s+ ++++ k+a+++     e++ +++   + ++s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  l+++v
  OGLUM09G03800.1 1089 SRYMCFSAKYAAKYlP--REKN-KIMRLRLPNKSYRYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKK--LMMMV 1169
                       5667888899999942..3344.455555566777777777999999**************************997444..44444 PP

8B344.52.9e-14120712831494
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                       + +++p k ae ++g+ ++     l+++sg++W+v +   k  ++ +l++GW++F+ka++L+e+D + F+ +g+ ++++ +
  OGLUM09G03800.1 1207 HGISIPEKVAEIFSGQITK--GFNLKSPSGETWRVGV--AKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSF 1283
                       459*******777777555..59999***********..*******************************77665554443 PP

9B343.36.6e-1414161511196
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y +++ +++     W +F ++n+L+eg +++F+l++  ++
  OGLUM09G03800.1 1416 FVVVLQTAHVRRRNILIVPTRFAADHLER--KSHDILLIRpNRKQKWSVKYYYlSNTTRGFNCH-RWIKFIRENRLREGNVCIFELMKGaRR 1504
                       788999********************544..45567776636779******8865555555544.8*******************9975455 PP

                       E..EEEE CS
               B3   90 felvvkv 96  
                         ++v+v
  OGLUM09G03800.1 1505 PIMTVHV 1511
                       5556655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1494186IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001697186IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-1498185IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-9109184IPR003340B3 DNA binding domain
CDDcd100175.66E-13112184No hitNo description
PROSITE profilePS5086310.01128186IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-21222322IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-21224322IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-17227319No hitNo description
PROSITE profilePS5086312.717228321IPR003340B3 DNA binding domain
SMARTSM010197.3E-10229321IPR003340B3 DNA binding domain
PfamPF023621.1E-14229319IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-14429533IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-15430534IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-10435532No hitNo description
PROSITE profilePS5086310.87436534IPR003340B3 DNA binding domain
SMARTSM010192.8E-4438534IPR003340B3 DNA binding domain
PfamPF023623.4E-9444526IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-17581686IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-15581685IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-14586682No hitNo description
SMARTSM010197.7E-7588687IPR003340B3 DNA binding domain
PROSITE profilePS508639.164588687IPR003340B3 DNA binding domain
PfamPF023621.0E-11588686IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-22709807IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-22711807IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465712805IPR003340B3 DNA binding domain
CDDcd100174.47E-20713803No hitNo description
SMARTSM010192.6E-16715805IPR003340B3 DNA binding domain
PfamPF023623.1E-17715801IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-179181017IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-169181016IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-109231004No hitNo description
PROSITE profilePS5086312.0129241019IPR003340B3 DNA binding domain
SMARTSM010195.5E-69251022IPR003340B3 DNA binding domain
PfamPF023624.8E-109331011IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-1510651177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1710701176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-1310741156No hitNo description
SMARTSM010190.001310761173IPR003340B3 DNA binding domain
PROSITE profilePS508639.710771173IPR003340B3 DNA binding domain
PfamPF023621.3E-910881169IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1711901293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06911941291IPR003340B3 DNA binding domain
CDDcd100171.66E-1311961289No hitNo description
SMARTSM010191.4E-611971291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-1711971293IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1112061281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-1714091513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2014101508IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-1714141510No hitNo description
SMARTSM010195.9E-914161513IPR003340B3 DNA binding domain
PROSITE profilePS5086313.01414161515IPR003340B3 DNA binding domain
PfamPF023621.4E-1114161511IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1523 aa     Download sequence    Send to blast
MMNNTPCGHE GSMSYHDNHL QSPSESSSLF NISLPPHSPF QELSGVDSTS LLVSDPPNMQ  60
QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG  120
LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILDF GYSGNSHFKV  180
QIFNPRASLM ITIDNHPEGK VWMNKPSTTC MDCITNHYWL HMDDRERYFF KVMMSVSDVK  240
DELAIPKKFA ANVRGKIPEQ VRLEVSDGKM YNVQVTEEQD ELVLRSGWAN FSSTYQLKHG  300
DLLVFIHSGH SHFKVLIFDP SCTEKEFSCV VTDNTSHVHE RSISHDNHLQ SPRSEILGKN  360
YSLCSSRKRS RMNPADYPSQ RPDVPSSEDI KDPMSSGGLQ KSKKSCYVLP MLYNMTSAQE  420
AEVLALEKKI QPQIPLYITA MDKTSVASGS LVFCKDYAVR YLLDQNRTIK LCQSGGSKTW  480
DISLDMDTDD LYALSTGWLD FFRGNLLQEG DICVFEASKS KRGVALTFHP FKESHCPKSS  540
EYTLSTKSPT RRVPKRDYFA TNLTNLTDQL ERKVKNKIKF IQSDIPIFLS VMRSSNCTRQ  600
SSLCFSVKYA SKYLPHKDQN MRLRLPETKY KCKAALHIDT STNLHKLLKG WGKFVNDNKL  660
EIHDICLFQL MKNKKKLTVT VHIIRKGEME KSHRVCKNCV ANHYWLHMDN HGKSFIKVMI  720
TDFKNGVTIP AKFARNFGGQ MSGTVKLETR NGKTYEVQVA KELNNLVLRS GWERFASAYE  780
LEKGDILVFI YSGNSHFKVW IYDPSACEKE LPCIITEQLP RVQQRSISHN NHTQLKRNAK  840
SAKLYVDSSG HSKETSEINP ANSPSWKPTE RVPSSEELDE PVDLANVQKA TKSFYSLPRM  900
CNMTSAQKAE VDALEKRIKP QIPLYITVMD KASATDGLLA ISKDYAVSYL LDKNETIKLC  960
HSGRSMTWDI SLDIDTDDQY ALSTGWLDFI RNNHLQEGDI CVFEASKNKR GVALIFHPLK  1020
QSHHPKPPGC VPSTKFPRHG VSKPNYIVSR FTTLSGQLKI KVEAKVQAMQ SEIPIFVAVM  1080
RESFIRGRSR YMCFSAKYAA KYLPREKNKI MRLRLPNKSY RYKAVFKINN KVHKLGGGWG  1140
KFVDDNKIKL GDICLFQLMK NKKKLMMMVM GEKGCESCRK WQEHYYREHM DVSRIRFFRL  1200
MTGDFAHGIS IPEKVAEIFS GQITKGFNLK SPSGETWRVG VAKVADELIL KSGWEDFAKA  1260
HELQENDLLF FTCNGHGNGS CSFDVLIFDA SGCEKVSCFF TGKKNSYMCK NFNSIGGQVA  1320
GQYLSSDSED TSTPSVLIGS PHKASTSKKL SGKTKTNPRK EPEDPNCSHW HVIEEKNTDD  1380
DEHADYHYTR FANYLTGEER DEIFSLVSLQ PGNPVFVVVL QTAHVRRRNI LIVPTRFAAD  1440
HLERKSHDIL LIRPNRKQKW SVKYYYLSNT TRGFNCHRWI KFIRENRLRE GNVCIFELMK  1500
GARRPIMTVH VIGKADNRFV LLG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0B0J60.0A0A0E0B0J6_9ORYZ; Uncharacterized protein
STRINGOGLUM09G03800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-28B3 family protein