PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G25260.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 438aa    MW: 47741.1 Da    PI: 8.694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G25260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.8e-07257279123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OGLUM08G25260.1 257 HYCQVCGKGFKRDANLRMHMRAH 279
                      68*******************99 PP
2zf-C2H2120.00063349372123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k+Fs  s+L++H + +
  OGLUM08G25260.1 349 YVCNRCGrKHFSVLSDLRTHEKHC 372
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-6255282No hitNo description
PROSITE profilePS5015712.653257284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6257284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034257279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
SMARTSM00355140311344IPR015880Zinc finger, C2H2-like
SMARTSM0035536349375IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASAERRIRM WWRTAGRPKH LWGRRSMLYM GHSRIYMDRY YDPIELHGQP PPLLMIPGGG  60
GGGGGGISPY LVQSQHGHGG GVDGMEMEEG GGFMGEQPQC HPLLYNLSVL KDRVQQLHPL  120
VGLAVAHNAH AHGPLDVSAA DAIIQEIVAA ASSMMYAFQL LCDLGTAPTT APSQETAAAS  180
AVVVKNNDHA ADAGQMEDDH LMQQQWQQNG SRQHDYSSHA HAPPVFHSET AAPAGATSAT  240
DTIIELDAAE LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKSKAALS NPTKLLAKGG  300
DETMAAAARK YSCPQEGCRW NRRHAKFQPL KSVICAKNHY KRSHCPKMYV CNRCGRKHFS  360
VLSDLRTHEK HCGDHRWLCS CGTSFSRKDK LIGHVSLFAG HQPVMPLDAP RAGKRQRSSS  420
ASVAGNIDDT TGIGMGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0AZ050.0A0A0E0AZ05_9ORYZ; Uncharacterized protein
STRINGOGLUM08G25260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein