PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G21320.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 655aa    MW: 68139.5 Da    PI: 9.2691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G21320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-093264437
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     W t Ed+ll++av ++G+ +W+++a++m+  R++
  OGLUM08G21320.1 32 WGTSEDLLLACAVSRHGTASWDAVAKEMQ-SRCP 64
                     9****************************.9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-52884IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-52984IPR009057Homeodomain-like
CDDcd001672.43E-63281No hitNo description
PfamPF002499.7E-93264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-63295IPR009057Homeodomain-like
PROSITE profilePS500906.3423282IPR017877Myb-like domain
Gene3DG3DSA:1.20.920.104.9E-14277423IPR001487Bromodomain
SMARTSM002971.2E-8293406IPR001487Bromodomain
SuperFamilySSF473701.44E-14295403IPR001487Bromodomain
PfamPF004398.7E-8312390IPR001487Bromodomain
PROSITE profilePS500149.973312387IPR001487Bromodomain
CDDcd043699.46E-11315401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MTARSGDPGV SPESSSAAAA AAAAGSGGGE IWGTSEDLLL ACAVSRHGTA SWDAVAKEMQ  60
SRCPSAAVFT PATCRLRFRV LHRRFSGGVT AENEDADGGE EEEEPDAAAV AGWVEELREL  120
RVAELRREVE KYDLSIGSLQ SKVKRLKEER EKSISGETKP PPPPAAVKEE EEDVRKGSPE  180
EAGAVEDRVS GHESGRSCKE SNSSDLKRSE NDPAVADDDR EEEEEEEAAA APAAGEVAVK  240
EEASGESVAG SKEADAEKES SDVQSSASPS RRRRRKGGGG GGEEAEAASP SVSVPLPAAE  300
AEPLVAFLES VRTSKAGAVF ERRLDSQDGE RYSGTIRRHV DLETVRSRLV GATAAAACYA  360
STSEFYRDMM LLCANALVFF PRGSPEHAAA LQLRALVSKQ VSKDRQPHAG AKAPAAAAAE  420
EEKKKPAKAD ADIAGPLLEK APIIVCRKRS SIAKAAAAAA KGEKAETDKK EKDGSEEKKA  480
AAAATTATAA ATAKDKKARG MRTNMSRGPA RNQKTAKLSE TGEGTKKSDK KGGGGGGSSS  540
AAAAAGGVAK KRNAVDFLNR MNQNGSPSTE RVSLLETLKL SAAATEQQKK SSSSSSGKGD  600
GRKEAGGSGS KKGAAASTPP GRRIGRPPKR AAAPPTPPPS KRAKDDKPTR KRGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588400.0HQ858840.1 Oryza sativa Japonica Group isolate UT1508 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650505.10.0uncharacterized abhydrolase domain-containing protein DDB_G0269086 isoform X1
TrEMBLA0A0E0AXI30.0A0A0E0AXI3_9ORYZ; Uncharacterized protein
STRINGONIVA08G22660.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-16DNA-binding bromodomain-containing protein