PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G20430.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 580aa    MW: 62893.9 Da    PI: 8.2474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G20430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32182238259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkkkve s+ d++++ei+Y+g+Hnh+
  OGLUM08G20430.1 182 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTDCAVKKKVESSQ-DGQITEIVYKGSHNHP 238
                      8*************************************999.***************7 PP
2WRKY105.72.4e-33393451159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  OGLUM08G20430.1 393 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 451
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-29177240IPR003657WRKY domain
SuperFamilySSF1182901.12E-25179240IPR003657WRKY domain
SMARTSM007744.3E-35181239IPR003657WRKY domain
PfamPF031061.2E-24182238IPR003657WRKY domain
PROSITE profilePS5081122.412182240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37378453IPR003657WRKY domain
SuperFamilySSF1182903.66E-29385453IPR003657WRKY domain
PROSITE profilePS5081137.597388453IPR003657WRKY domain
SMARTSM007741.7E-38393452IPR003657WRKY domain
PfamPF031062.2E-25394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAARTGFGVL KIDTSRVGYS TPIRSPVTIP PGVSPRELLE SPVFLPNAIA QPSPTTGKLP  60
FLMHSNVKPS IPKKTEDETR HDRVFFFQPI LGSKPPTCPV AEKGFSVNHQ NQPSVTDNHQ  120
ELSLQSSSTA AKDFTSATIV KPKTSDSMLD NDDHPSPAND QEENATNKNE EYSSDLIITP  180
AEDGYNWRKY GQKQVKNSEH PRSYYKCTFT DCAVKKKVES SQDGQITEIV YKGSHNHPLP  240
PSNRRPNVPF SHFNDLRDDH SEKFGSKSGQ ATATSWENAA NGHLQDVGSE VLTKLSASLT  300
TTEHAEKSVM DKQEAVDISS TLSNEEDDRV THRAPLSLGF DANDDDVEHK RRKMDVYAAT  360
STSTNAIDIG AVASRAVREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  420
HPGCSVRKHV ERSSHDLKSV ITTYEGKHNH EVPAARNSGH PSSGSAAAPQ ATNGLLHRRP  480
EPAQGGGGGS LAQFGYGSAG HRPAEQFGAA AAGFSFGMLP RSIATPAPSP AIAVPAMQGY  540
PGLVLPRGEM KVNLLPQSGN AGAAASQQLM GRLPKQHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36182454878Probable WRKY transcription factor 4
2lex_A1e-36182454878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0AX560.0A0A0E0AX56_9ORYZ; Uncharacterized protein
STRINGOGLUM08G20430.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-108WRKY DNA-binding protein 2