PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G11390.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 567aa    MW: 64454.2 Da    PI: 9.1367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G11390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.4e-18221031199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + ++ +v+p +f++++  k  +s t+tle+++g+ ++v +   k+ +r++l +GW+ Fv+an ++e+Df+ F++ g+s+f   v+vf++
  OGLUM08G11390.1  22 F-KHSMVIPDRFLSHFAAK--SSGTITLETPNGNMYKVGV--GKNMKRTLLLSGWEAFVHANSIQENDFLSFRYRGSSRF--AVTVFDA 103
                      4.456********777655..5669***************..********************************998888..9999987 PP
2B342.61.1e-134425151589
                      -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       l +pk++a++h  +  es+ +tl+   ++++W  +l++++ ++ y+l++ W +Fv +n++ egD+++F+ ++  +
  OGLUM08G11390.1 442 FLEIPKEYAAAHFPN--ESVAITLQMlGKNKKWHPRLCMENDKRIYMLRGHWLDFVLDNHVVEGDICLFEPMKGGK 515
                      478*********855..6778888885577****************************************665444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.66211104IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-2012105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1014104IPR003340B3 DNA binding domain
CDDcd100177.69E-1819102No hitNo description
Gene3DG3DSA:2.40.330.103.5E-1920104IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-1621103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-12205319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-11206310IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-5212311IPR003340B3 DNA binding domain
CDDcd100174.29E-9212309No hitNo description
PROSITE profilePS508636.456212311IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19420519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-19422521IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-15425518No hitNo description
SMARTSM010191.7E-7427525IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744428524IPR003340B3 DNA binding domain
PfamPF023624.2E-12441516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MRKPCECCHT KMKFIWQMNG NFKHSMVIPD RFLSHFAAKS SGTITLETPN GNMYKVGVGK  60
NMKRTLLLSG WEAFVHANSI QENDFLSFRY RGSSRFAVTV FDASGLEKAR TYIDILSSSD  120
DHTTQSSASD TSDECQKVRP NHHGKQAKKP SVSSSEDLSA EDGSSGHRSL ESEDLGRFSS  180
PYYLPGHHKL AKEQKAELVA LVDKIQPEIC VLVIIMNKTN VKRHPDLVVP KDYALLHFPH  240
KNQIITLELP GKRKNWACKF RIRADGGGRH LYLGDFVHDN RILEGDLCIL QPMTKNDASV  300
FTMTVHLIRK ERTDIASSHQ TRKINSGGIS SSSHHDTTRH IHQLVCVCTN RMHVCNFIAH  360
SFHLPVETCV VCIGEGSPDE NDSFKSDDLQ TLPITDYVLS YKSYLSRAQT GQVIMLLGEI  420
RPKKPVLVAV MRKKNVQSSI PFLEIPKEYA AAHFPNESVA ITLQMLGKNK KWHPRLCMEN  480
DKRIYMLRGH WLDFVLDNHV VEGDICLFEP MKGGKFLCSQ FTSFAPRQLI TRVELVFKGL  540
AQVMEEPIQR WHQVFILRKN QLMVWKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2370910.0AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0ATY70.0A0A0E0ATY7_9ORYZ; Uncharacterized protein
STRINGOGLUM08G11390.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-24B3 family protein