PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM08G03020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 340aa MW: 36054.9 Da PI: 10.3857 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 108 | 152 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky OGLUM08G03020.2 108 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 152 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.431 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-17 | 102 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-18 | 104 | 156 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-11 | 105 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-12 | 108 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-12 | 108 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.64E-10 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MPQDSRPAAM RLFGVTISPP PPPPEPEPEP DPSDPRDPSP RPAREDAMRK CKSMGNLAAA 60 AAAASSAAAG GGGAGDAGGS GDGYLSDGGL LLSSGKRRRA QERKKAVPWT EEEHRTFLAG 120 LEKLGKGDWR GISKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMATDMSPAP 180 NCPVLPPSMG KLHDMVAMTK QLQNSSLEGV SSSSTVNLAP QVARDLPPPI PSFKATNVDS 240 SLSKMNHMDG FLRAPMLFRP IPRIAEGASS STPATASIAD LEFQANLTAC SNALFASPRR 300 KPKKADPPAE KDLDLTVAPP SQQTRASISS QNAVGVIQVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242017 | 0.0 | AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648291.1 | 0.0 | transcription factor MYBS3-like isoform X1 | ||||
TrEMBL | A0A0E0AQU8 | 0.0 | A0A0E0AQU8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM08G03020.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-37 | MYB_related family protein |