PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM07G26470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 34971.7 Da PI: 6.6682 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.6 | 2.5e-23 | 123 | 184 | 2 | 59 |
--SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK++++s+ +prsYYrCt++ gC+++k+v++s+++ + ++i Y geH+++ OGLUM07G26470.1 123 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKHVQTSESNSSEFVISYYGEHTCR 184 89**************9736*********9999**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-24 | 108 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-22 | 115 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.736 | 117 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-34 | 122 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-22 | 123 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV 60 MSRLQSSSLS VMSPGGGGGG RRGSGGRKKK GATAVAGPHR RSSSGRRRSK SPFVRMVTTK 120 ELEDGRQWRK YGQKHIQDSP NNPRSYYRCT HRPDQGCMAT KHVQTSESNS SEFVISYYGE 180 HTCRDPSTIP FVVEAEAPAA DYANLISFGS SGGASTSRVD PLRQSRHRLM AEAVDPTPSC 240 SFANCHSPVL SPECASEAAA LSSSLPLSAV VGSAVTTPST SIVGSAPSDY DWPSGLAGGD 300 MAGSFPSSPS SLGFMTGSFG NLPGDDDDMF GFDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 117 | 184 | 3 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110900 | 0.0 | AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646872.1 | 0.0 | probable WRKY transcription factor 70 | ||||
Refseq | XP_015646873.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0E0APB9 | 0.0 | A0A0E0APB9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM07G26470.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12527 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 8e-19 | WRKY DNA-binding protein 46 |