PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G22980.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 538aa    MW: 59448 Da    PI: 4.4432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G22980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-143276348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W+teEd+ l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  OGLUM07G22980.1 32 SWSTEEDDVLRTQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 76
                     6****************************9.**************7 PP
2Myb_DNA-binding41.62.8e-1382125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd+ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  OGLUM07G22980.1  82 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 125
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.5172580IPR017930Myb domain
SuperFamilySSF466894.87E-2629123IPR009057Homeodomain-like
SMARTSM007171.6E-122978IPR001005SANT/Myb domain
CDDcd001671.25E-123276No hitNo description
Gene3DG3DSA:1.10.10.602.3E-183383IPR009057Homeodomain-like
PfamPF139211.8E-143392No hitNo description
PROSITE profilePS5129417.36781131IPR017930Myb domain
SMARTSM007173.5E-1381129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-1984130IPR009057Homeodomain-like
CDDcd001672.19E-985126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DNWTIIAAQF  60
KDKTARQCRR RWYNYLNSEC KKGGWSREED LLLCEAQKVL GNKWTEIAKV VSGRTDNAVK  120
NRFSTLCKRR AKDDELFKEN GSLCSSTSAK RALAQTGCLT SGASGSAPPI KQMRPCNSDF  180
KENMTPNMRL VGQDKSTQDS RQPLAIVYQN NQDNMNTMDT QNLVAKTAAK QLLAGEQNCV  240
KHEGNFLNKD DPKIATLLQR ADLLCSLATK INTENTSQSM DEAWQQLQHH LDKKDDNDMS  300
ESSMSGMASL LEDLDDLIVD PYENEEEEDQ DLREQTEQID VENKQNSSQT SMEVTSQMVP  360
DNKMEDCPND KSTEDNNMEP CPGEDIPTSE NLTEAAIEDS LLQCVEYSSP VHTVIQAKTD  420
AEIAASENLS EVLEHNRLQC IQLASPAQTT TPVEANAETP ASEKLSEVVK CNNPSCIEFT  480
SPAHTVPTFL PYADDMPTPK FTASERNFLL SVLELTSPGS RPDTSQQPSC KRALLNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-283313010107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647542.10.0transcription factor MYB124 isoform X2
TrEMBLA0A0E0AMZ80.0A0A0E0AMZ8_9ORYZ; Uncharacterized protein
STRINGORUFI07G24080.10.0(Oryza rufipogon)
STRINGOS07T0627300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.25e-84MYB family protein