PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 446aa    MW: 49609.1 Da    PI: 4.8861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.8e-12101136338
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
           SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 
                      ie+++ r+ t+skRr g++K A+ LS L+da va+ 
  OGLUM07G14530.1 101 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 136
                      99*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-690149IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-593113IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-1397160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.45698135IPR002100Transcription factor, MADS-box
PfamPF003191.1E-11101141IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-5113128IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-5128149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEREFCEEME SQICQFGTFL EVNNQHSATP KGKTIPVKCT DCLPGVASRS LTVIPLEVPH  60
DVLLSAREAK TQYNSTFEHN LSGTNHYRMV RRGRRKGVRY IEEDRDRSLT LSKRRDGLFK  120
LANDLSLLTD ASVAICLHDN NKAQFFGAPS VKPVVDAFVS EAEPFADEQL KAKLTSMQSE  180
LVQLENEEEE KDKKTEESIQ RFKEAQEESL GMGMTKHLFS RLEDLSHDDM RELLDVLLPL  240
QQDFKKRLPP LRRGSKLQIG GSSAWAHQQP SCSHFLASHR PFTPLLPGGT SGVPMIPPPP  300
VPGSPWSHIF PLRPPLFPSP ELVPSQQLPP VSPPQNTVAP PPMHAPLVQQ PLTNQSSAVP  360
LLTQWQMRFG DQPPAEVQAC TPIEQPQNDN AVHTPTFSDS FLSELLADVS DDGIATAEPL  420
CSPPIDDQFL ADIDWLAELD TIDGNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037420.0AP003742.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1118_D07.
GenBankAP0043380.0AP004338.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0507H12.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882749.10.0uncharacterized protein LOC107277131
TrEMBLA0A0E0AK330.0A0A0E0AK33_9ORYZ; Uncharacterized protein
STRINGOGLUM07G14530.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-08AGAMOUS-like 61