PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G14360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 311aa    MW: 34319.2 Da    PI: 4.8806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G14360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.82.8e-46321602125
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  OGLUM07G14360.1  32 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICS 124
                      69***************************.89*************96345556789************************************** PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmhe 125
                      +     +g  +glkk+Lv+y+g+a kg+ktdW+mhe
  OGLUM07G14360.1 125 AataaaGGDCIGLKKSLVYYRGSAGKGTKTDWMMHE 160
                      9777666666*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4831166IPR003441NAC domain
PROSITE profilePS5100544.31731180IPR003441NAC domain
PfamPF023652.3E-2333160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKRGCEDELG AGDVILRGVE EVEEEEDDEL VLPGFRFHPT DEELVTFYLR RKIAGKRLSI  60
EIIKEMDIYK HDPSDFLKTS TVGSEKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDR  120
PICSAATAAA GGDCIGLKKS LVYYRGSAGK GTKTDWMMHE NITHKKQPQP QLAVAAAPAP  180
APVPDATSSI TGSLESDSAG DDVVEYMNTL QPPPPPPPAS NVNGGYSNQH YFQEQWNSSS  240
NDNTTVFHQH AAAPPPEPSP ATAMAGFGHD QSVLSSPAPS DFYYKDGCND DIYRMVMELA  300
DPSLFYDHIY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-42231606137Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646514.11e-177transcription factor JUNGBRUNNEN 1
SwissprotQ9SK557e-67NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0E0AK100.0A0A0E0AK10_9ORYZ; Uncharacterized protein
STRINGOGLUM07G14360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-64NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]