PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G12390.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 271aa    MW: 28399.9 Da    PI: 7.6811
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G12390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.3e-26130187258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      dD y WrKYGqK++ g++f+rsYYrC++  gC+++k+v++s++dp+ +eitY g H++
  OGLUM07G12390.1 130 DDSYPWRKYGQKDILGARFARSYYRCAQMlGCTARKQVQQSDDDPSQLEITYIGLHTC 187
                      8**************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.07E-23124188IPR003657WRKY domain
PROSITE profilePS5081119.715124185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-24127187IPR003657WRKY domain
SMARTSM007744.0E-33129189IPR003657WRKY domain
PfamPF031063.1E-24130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASGAGGGTA ATERLIRSAQ KSTNQLKALL AGGGGGGGRS SGAVEVILAD ISDSLSQALA  60
SLMLRAACDD QSLPAAAPPP PPPEASLLPS YGQCVVANSG GRSVSKRKAQ RRSRADGSSR  120
RIILELGDRD DSYPWRKYGQ KDILGARFAR SYYRCAQMLG CTARKQVQQS DDDPSQLEIT  180
YIGLHTCGGD RPSSPAPTNP ADGPRCDAAT SSHRLLPSAL QQKLEEHVPA ASDDMMMACT  240
PSWLFIPSPA CSQSELLSEG ESIGILLSLN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-161281981580Disease resistance protein RRS1
5w3x_D2e-161281981580Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645532.11e-105uncharacterized protein LOC107278742 isoform X1
TrEMBLA0A0E0AJA30.0A0A0E0AJA3_9ORYZ; Uncharacterized protein
STRINGOGLUM07G12390.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-22WRKY DNA-binding protein 55