PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G04880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 407aa    MW: 44528.6 Da    PI: 4.763
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G04880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-13125227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ld.g 86 
                      f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d g
  OGLUM07G04880.1 125 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLQGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDdG 214
                      899********************888**9986666676..999************..*******************************664534 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                      ++++el+v+v+r+
  OGLUM07G04880.1 215 DDDGELYVGVRRQ 227
                      599*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-12120238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-12120233IPR015300DNA-binding pseudobarrel domain
CDDcd100179.70E-8123207No hitNo description
SMARTSM010190.0033125228IPR003340B3 DNA binding domain
PROSITE profilePS508638.572125228IPR003340B3 DNA binding domain
PfamPF023627.1E-10125227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAALPPPPLA DDGDGIVDRA MWLACAAPNS GRLPAVGSVV FYFVDGHAAQ FCQFPAPLLE  60
QLAVPGPRVF LCTVAGVRLR ADALTNEAYA DITLDPVADN DVPHLAPAPA PAPAAAAGGQ  120
QLRYFVKTLM ISDFDFRIRF SAPMADAKGV FPPLVDAKAV QPLLVKDLQG SPMTFDYGRK  180
GKRVTLAKVW KKFRDDMDFV DGDSVIFMRR RDDGDDDGEL YVGVRRQRTL ERPLRNTMRR  240
SRSPTPPQAA VQEAVLAAAG QAAAGERFRV AYRSRQDGDE FVVPREAVDE GLRARLTSLV  300
EVEFVWAVED GAPPIVGPRG KVTAIATGQL WRNLEIVWDG NSEMDMSANF WQVRPVEEVD  360
ISPSTPPKRL KNCEIDDTAS SSVSVDNGDE QVPTMRQRLE ALFPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-281933921336Auxin response factor 1
4ldy_B6e-281933921336Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0E0AGK20.0A0A0E0AGK2_9ORYZ; Uncharacterized protein
STRINGOGLUM07G04880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.19e-27auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]