PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G04870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 781aa    MW: 85594.9 Da    PI: 7.2393
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G04870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.75.9e-20119231199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegDf 79 
                      f+k+l+p+dv++++ lvlp     eh         +++   +   ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D+
  OGLUM07G04870.1 119 FEKQLSPADVTSNA-LVLPAGA--EHglppldiaAYQT--ARLFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRDT 207
                      99***********9.9999874..78577777665554..4579999*********************************************** PP

                      EEEE....E-SSSEE..EEEEE-S CS
               B3  80 vvFk....ldgrsefelvvkvfrk 99 
                      vvF+     dg+ ++el+v+v+r+
  OGLUM07G04870.1 208 VVFMrrggGDGDGDGELLVGVRRA 231
                      ****7765566799999**99997 PP
2B380.12.3e-25489594199
                      EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+l+psdv ++     +++v+pk+ a+eh ++ + + +l+++d++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F++
  OGLUM07G04870.1 489 FDKKLSPSDVAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTDLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMR 580
                      89***********99998899**********776.455.9********************99999999*************************4 PP

                      -SSSEE..EEEEE-S CS
               B3  85 dgrsefelvvkvfrk 99 
                       +r ++e++v+v+rk
  OGLUM07G04870.1 581 -RRPGGEPLVGVRRK 594
                      .44**********98 PP
3Auxin_resp28.56.4e-11254330276
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                      + a++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  OGLUM07G04870.1 254 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 330
                      66778889********************9875333344999***********998875.569******9999966555 PP
4Auxin_resp57.46.5e-20611687183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ +as++++F+v+Y+P+++t+eFvv++e+v  +   ++++G+R+++ ++ +d ++r++   +Gtv   +d+d+    +S+Wr+L+
  OGLUM07G04870.1 611 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVDGSP--PLAPGTRVRLLMNPDDTRRRSQppvYGTV---RDVDS----RSEWRMLE 687
                      67889*****************************9..*********************95555555...55555....9****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-21112235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-14114230IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-10117210No hitNo description
PROSITE profilePS508638.572118232IPR003340B3 DNA binding domain
PfamPF023621.1E-16119231IPR003340B3 DNA binding domain
SMARTSM010190.0047119232IPR003340B3 DNA binding domain
PfamPF065072.0E-5258333IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.104.5E-20483595IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-16484595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-14488593No hitNo description
SMARTSM010191.9E-8489595IPR003340B3 DNA binding domain
PfamPF023623.2E-15490594IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983494595IPR003340B3 DNA binding domain
PfamPF065072.1E-7615686IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGTL VYYIPHGHIE QCAEDPALLL  60
SRLPDPIHPV PCTVADLVLD VDAESGEAYA TISLLPGSHD DTTARRQVPA HGEPGFRFFE  120
KQLSPADVTS NALVLPAGAE HGLPPLDIAA YQTARLFDVR DLRGKRFEFV HIWDKKRCRY  180
MLGDLGVNDN DGWRGFVKAK RLATRDTVVF MRRGGGDGDG DGELLVGVRR APRARGGHHP  240
RPGVEDNKVV SEVWLAMQGV TPFEVTYYPR EGTFEFVVSR DEYIGFSFSP FYPFVPGTTV  300
HLRMNPLQIA QSISGTVRTF DHLRPWRMLE VDWDQAASPI SYRIHRQVNS WQVLRQPQPA  360
ATTSAVRIRD AIVATPQVQI MAPPRPPPPT TTTGMVPVID HDIWLACATP YSGRLPVVGS  420
AVYYFPQGHA EQCHTCTTCL IPDNRHRLRC TSDDSYAMIS LFPGDCYVTH RPLPAARDPV  480
GGQREFCFFD KKLSPSDVAA NGGGSGALFV IPKPSAAEHV LPRIPDLRVT DLQGGRWEFG  540
HTWSDADTDR RSSSHTLAAG WSAFVKAKRL CVGDTVIFMR RRPGGEPLVG VRRKPHGGMP  600
VGIPDKHVAD AWLDASSAQP FRVTYCPWQG TAEFVVRREE VDGSPPLAPG TRVRLLMNPD  660
DTRRRSQPPV YGTVRDVDSR SEWRMLEVDW DRDSPLAPTM NRRVNSWQVQ PVQLALPPQG  720
SDEEAAAATT STAHAGDATT SAPSLALQVQ TMASSSSSSA PIIPSRGSAF RIVNPRDGSQ  780
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-271771049388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0AGK10.0A0A0E0AGK1_9ORYZ; Auxin response factor
STRINGOGLUM07G04870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-32auxin response factor 17