PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G28430.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 310aa MW: 34455.9 Da PI: 7.5313

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G28430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.8e-24	102	198	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ +H OGLUM06G28430.1 102 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHHV 195 6****************************************99999999999999999**************99************ PP FAR1 87 Hel 89 H++ OGLUM06G28430.1 196 HPV 198 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	102	198	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGPPCEAQSL LSLFARFLLL PLERIPFPFR STPTPALLHS RRRELRGVGG MEGHRRGEAD 60 DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR AGFAVRTDKS 120 RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC MAMCEVTKKE 180 PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA TEPSDEPTGA 240 PAAARWDYVI HKYNLEENTW LQSLYDTRQQ WAWVYQKGSF FPELLKSQRS ERLNNCTEAL 300 NSTKASSTSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003634	0.0	AP003634.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0655A07.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641723.1	1e-114	protein FAR1-RELATED SEQUENCE 9
TrEMBL	A0A0E0AE78	0.0	A0A0E0AE78_9ORYZ; Uncharacterized protein
STRING	OGLUM06G28430.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP53443	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-13	FAR1 family protein