PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G21780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 319aa MW: 34770.5 Da PI: 5.4256 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt +LH+rFv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl OGLUM06G21780.2 47 RQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 101 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.367 | 44 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-32 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-26 | 48 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-8 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-12 | 133 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MYEPKPFSSI VLAHNDPVSH NQQIERINNN VVSNSGGNSS NSNFAARQRL RWTDDLHDRF 60 VDAVTQLGGP DRATPKGILR IMGVQGLTIY HVKSHLQKYR LAKYIPDPTA DGAKSDKKDL 120 GDLLADIESS SGMEIGEALK LQMEVQRQLQ LRIEAQGRYL QKIIEEQQRL SGVLGESGKL 180 GALGPAPGEP YQDSNKTDPS TPVPTSESPI RDKAGSGLFK TISSHDDCRE PLTPDSSCRA 240 GSPLESPPRA SKRIRVSSDI DHRGNNEFPP PLKVPEPSSG SDFRQESSVL LSSSTVHFDS 300 LESLDADENV FTNGSGSDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-24 | 47 | 104 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ032627 | 0.0 | FJ032627.1 Oryza glaberrima clone a0079B18 subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, IQ calmodulin-binding motif family protein, and EMB2261 putative genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644024.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_015644025.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_025881863.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 8e-88 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0ABR3 | 0.0 | A0A0E0ABR3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G21780.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-88 | G2-like family protein |