PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17310.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 207aa    MW: 22526.1 Da    PI: 4.7094
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF786.9e-251966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
  OGLUM06G17310.1 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66
                     8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.8E-261080IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-311069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.7451070IPR002100Transcription factor, MADS-box
CDDcd002651.58E-331178No hitNo description
PRINTSPR004042.1E-211232IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA  60
GNVFAFGQPT VDAVLRRFDP LHADAEAPAP AAVEDGGDDV VVADPEELDA LRRAEEQTKA  120
QVAAEQARMR DVGDKVTQAM AGSPLWWEAD VEALGEAELP EFVRALERLR DSVRRHASTL  180
PSTASPAPAP AEQEEEVPEL DVSDYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-151078169Myocyte-specific enhancer factor 2B
1tqe_Q2e-151078169Myocyte-specific enhancer factor 2B
1tqe_R2e-151078169Myocyte-specific enhancer factor 2B
1tqe_S2e-151078169Myocyte-specific enhancer factor 2B
6c9l_A2e-151078169Myocyte-specific enhancer factor 2B
6c9l_B2e-151078169Myocyte-specific enhancer factor 2B
6c9l_C2e-151078169Myocyte-specific enhancer factor 2B
6c9l_D2e-151078169Myocyte-specific enhancer factor 2B
6c9l_E2e-151078169Myocyte-specific enhancer factor 2B
6c9l_F2e-151078169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.11e-102agamous-like MADS-box protein AGL62
TrEMBLA0A0E0AA571e-144A0A0E0AA57_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17310.11e-145(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-17AGAMOUS-like 61