PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G17270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17729.4 Da    PI: 11.2713
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G17270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.8e-211962245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     rie+k +rqvtf+kRr+g++ KA+ELS+L+++ vav++fs+ ++
  OGLUM06G17270.1 19 RIEDKPRRQVTFTKRRAGLFRKASELSILTGTAVAVLVFSEANR 62
                     8***************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-251069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.2351070IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-201076IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-161232IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211964IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVHPRGRPSK GRQAIEIRRI EDKPRRQVTF TKRRAGLFRK ASELSILTGT AVAVLVFSEA  60
NRPYALADPS SSLVDDAVLR SRCYAPAPGV HDCEPEALRR AADEAKVEVA RLRDVAGRRF  120
WWWWEATNVE ALGEAELPEF TRVLGRVRAA VVRRRAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036190.0AP003619.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0577H07.
GenBankAP0043250.0AP004325.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1230_H04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882204.13e-47uncharacterized protein LOC112939359
TrEMBLA0A0E0AA511e-106A0A0E0AA51_9ORYZ; Uncharacterized protein
STRINGOGLUM06G17270.11e-107(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1817844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-17AGAMOUS-like 61