PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G12960.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 719aa    MW: 82070.6 Da    PI: 10.0458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G12960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07504544346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  OGLUM06G12960.1 504 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 544
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2428499IPR001005SANT/Myb domain
PROSITE profilePS500903.95431497IPR017877Myb-like domain
SuperFamilySSF466898.39E-7477551IPR009057Homeodomain-like
SMARTSM007170.51501548IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6503551IPR009057Homeodomain-like
PROSITE profilePS500906.806504546IPR017877Myb-like domain
PfamPF139211.5E-5505548No hitNo description
SMARTSM0071721566632IPR001005SANT/Myb domain
PROSITE profilePS500906.574567630IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5569649IPR009057Homeodomain-like
SuperFamilySSF466891.92E-6610687IPR009057Homeodomain-like
PROSITE profilePS500907.898632685IPR017877Myb-like domain
SMARTSM0071719636687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MWKRALGLDF RGSKAAPLAP LSRRPSPSPA IRRSSAVSQR RRTARRHPAP SRGSSLPGWS  60
PRARRTHSSS APRAVTPTMG GEGAERRSKK KEKGKRQEEK AESGSRGDGE AVKLDLATDF  120
PSNSMGKVAM DVEEAKEVHR RKKRKEKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG  180
LKVEQHCSED VQGDMSKCGS EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA  240
GLLHAEMGRG EKEQGKKSKK SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG  300
DQVNISKKAV KIKGNKKRKN ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN  360
EVGRDDKNDK KKKKSKERNG GRKCEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK  420
SAESEVVHGK RFTPEENATL MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS  480
LPHRPLTAIY KRARILLYRS DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD  540
TWRRIKPKNL KSVARFCISI KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK  600
LRDNIAWEAI SDKLTTRNHK NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV  660
EDIDWDNLLD HRSGEVCRQR WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKKRKE
2140146RKKRKEK
3213221KKKKKKERK
4285290KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0A8L60.0A0A0E0A8L6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G12960.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-94MYB_related family protein