PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G05040.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 630aa    MW: 68175.9 Da    PI: 4.3043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G05040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11188233247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  OGLUM06G05040.1 188 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 233
                      56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.601182238IPR017930Myb domain
SuperFamilySSF466896.5E-15184239IPR009057Homeodomain-like
SMARTSM007171.4E-9186236IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-13187236IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-8187235IPR009057Homeodomain-like
CDDcd001675.27E-8190234No hitNo description
PfamPF002495.3E-8190233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEWTAAEMDE ARSIVARLTN AYDSGSLVAG AGNGDTRHDR IVRELQAWLP WRTMDQLIGL  60
YIELMTEEPA AAQPQYFDAG AVIDPTFDFF NDHNNFLGMP PPPVQQADDH NMNNVVADAG  120
MNYYYGGGGA GGAMVFGGAP MGETVEQAAP PAPAPVPVVP VVMNRDDDEV NNQGGGRHLA  180
APTNTTRRFW TTEEHRQFLR GLRVYGRGEW KSISMNFVRS KTPVQVSSHA QKYFRRVESA  240
AADKQRYSIN DVGLNDDDDD DSAMDGTNIY SNNKFNNNFG GWQSLAFAGG HLEPVSGGAA  300
PGQVIAPASS SAAAMNSAAQ FWAPMLFNPQ IQQQFMQMQA QTQQAWNDQH MMMAAAPMEG  360
AIDTNFEPAG MEWTAAEMHE ARSIIARLTN AYDSSALVAG AGNGDTRHDR IVRELQAWFP  420
WRTMDQLIGL YIELMAEEPA AAQPQYFDAG AVVDPTFDFF NDHNNFLGMP PPPVQQADDH  480
AMNNAAPPVP APVAVAPVVM NRDDDEVNNQ GGGRHLVFAL SALLAGLALA IDEGFGMEWT  540
AAELAEARSV IARVSDAYNS GVGSSSSACD TKHDRIMREL QARFPSRTMV QVIDLYVNLT  600
VETAAQPQDA GSAGDAAPSS TLLLPAACPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.15e-94PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0E0A5R10.0A0A0E0A5R1_9ORYZ; Uncharacterized protein
STRINGOGLUM06G05040.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.29e-21MYB family protein