PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G05030.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 607aa    MW: 66008.8 Da    PI: 5.9757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G05030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12463507347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT+eE+ l+  + + +G g+Wk I++++ ++Rt+ q+ s+ qk+
  OGLUM06G05030.1 463 IWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQVSSHAQKF 507
                      5******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.463174231IPR017884SANT domain
SMARTSM007171.5176229IPR001005SANT/Myb domain
CDDcd001678.80E-5182227No hitNo description
TIGRFAMsTIGR015571.7E-8188229IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-4188228IPR009057Homeodomain-like
SuperFamilySSF466895.74E-9188231IPR009057Homeodomain-like
PROSITE profilePS5129414.372455512IPR017930Myb domain
SuperFamilySSF466892.01E-16458512IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-14459510IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-8459506IPR009057Homeodomain-like
SMARTSM007178.1E-9460510IPR001005SANT/Myb domain
CDDcd001673.44E-8464508No hitNo description
PfamPF002492.9E-9464506IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MVLGGAAMEE GAVAVNGGDG EVVNPDNADD DAVSDWDACV RRGDWRNISR YFVRSKTPEQ  60
ISMYADNYFH MMEIAAAMEA DGGDDDDGHH EINNNNNNLG GGQLHAVVGA VGHGPGAGHI  120
APATPSNNNA AATAVNNNVD TPFWVPLLYN PEIEQRMMEM QAQSQKAWDD QQMKMAEAAT  180
PKEEGAADKQ FLRGLRVYGR GEWKSISMNF VRSKTPVQVS SHAQKYFRRV ESAAADKQRY  240
SINDVGLNDD DDDAAAAMDG TNSYSNNNFG GWQSLAFAGG HLEPVSGGAA PGQGWTASEI  300
EEARSLITSP NNGGEGGDGE GNKQKHCGHI VMELHEWFPW KTIGQVIGLY MKLNAGKPMV  360
MHSLNKSDAN NSIGEVDHVS ALANGNPVRL EEHRPMLNNV GLVFDYPLEE MEMENQTDQE  420
LKMVVEEEVQ PKEGLVIKEK EAGVSKIHTN SQHVTPSIKR RVIWTEEEHR LFMVGLRVFG  480
RGDWKNISKH LVTTRTAAQV SSHAQKFFLK MEARGEAVPP PAKRRRRRIT GDQQAAAAEH  540
AAALRRRMPV PPPPFNPFLL PSLVAPVMHR LLPPGSQAAG AAASGSGGQG ASLPQMPWIN  600
GANGMGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1522527KRRRRR
2522528KRRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642214.10.0uncharacterized protein LOC107281238
TrEMBLA0A0E0A5R00.0A0A0E0A5R0_9ORYZ; Uncharacterized protein
STRINGOGLUM06G05030.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165491112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-17Homeodomain-like transcriptional regulator