PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G28080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 278aa    MW: 29728.2 Da    PI: 4.7877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G28080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY825.9e-26101161158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y g+H++
  OGLUM05G28080.1 101 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 161
                      58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2788163IPR003657WRKY domain
SuperFamilySSF1182901.05E-2495163IPR003657WRKY domain
PROSITE profilePS5081121.26496159IPR003657WRKY domain
SMARTSM007741.3E-39101163IPR003657WRKY domain
PfamPF031064.6E-25102161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA KGMAKVRRQV RVTSVQDTAS LDDGLSWRKY GQKDILGAKY  120
PRAYFRCTHR HTQGCNATKQ VQRADGDPLL FDVVYLGDHT CGQAAVAAVA QSAPPEHAGQ  180
EQQRQSSLLA AGTEGIHQQV VAEPMEAAAA AAPFLFTSTA AGGVDDGYFS FISPANSDCQ  240
FSSDFSAGSV GVDMDHEACF EDLFSNTLEF FQSEIQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-23100161768OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.11e-180probable WRKY transcription factor 41
TrEMBLA0A0E0A3210.0A0A0E0A321_9ORYZ; Uncharacterized protein
STRINGOGLUM05G28080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-29WRKY DNA-binding protein 46