PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G24880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 207aa MW: 21672.2 Da PI: 8.6217 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.8 | 1.9e-32 | 128 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+v+r a+d +v++tYeg Hnh+ OGLUM05G24880.1 128 LDDGYRWRKYGQKAVKNSDFPRSYYRCTHHTCNVKKQVQRLAKDRGIVVTTYEGVHNHP 186 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-33 | 114 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 120 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.38 | 123 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-37 | 128 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-26 | 129 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDGLEAAAGD QQHGRLLIPQ LPAAYLASSS MAALSPAGDD WAASLILPDG GSAAAGVGED 60 DLGGGVMAAA AAESSCGGSS TVTSSGVTEA AAAAATTTRR GRGNGKKAGG GGRTPRFAFH 120 TRSENDILDD GYRWRKYGQK AVKNSDFPRS YYRCTHHTCN VKKQVQRLAK DRGIVVTTYE 180 GVHNHPCEKL MEALSPILRQ LQLLSQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-24 | 121 | 185 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-24 | 121 | 185 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108499 | 0.0 | AC108499.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1187_E11, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639822.1 | 1e-152 | probable WRKY transcription factor 24 | ||||
Swissprot | Q9FFS3 | 2e-55 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A0E0A1W5 | 1e-150 | A0A0E0A1W5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PQ86 | 1e-150 | A0A0E0PQ86_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM05G24880.1 | 1e-151 | (Oryza glumipatula) | ||||
STRING | ORUFI05G24970.1 | 1e-151 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 5e-55 | WRKY DNA-binding protein 56 |