PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G24010.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

VOZ

Protein Properties

Length: 657aa MW: 71602 Da PI: 5.3409

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G24010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	420.1	3.8e-129	324	541	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 p+ps++lgpkcalwdc rp++gs+++q+yc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaalsakvqgk+vgip+cegaat+kspwna+ OGLUM05G24010.1 324 PSPSQYLGPKCALWDCGRPVRGSDECQHYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALSAKVQGKNVGIPVCEGAATTKSPWNAP 417 89************************************9799********************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 elfdlsllege++rewlffd+prraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eye+n++dalalyrle+ OGLUM05G24010.1 418 ELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYETNDSDALALYRLEY 511 ****************************************************************************************** PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 k++d+k+s+k+k+++++l+++q++++rl+a OGLUM05G24010.1 512 KSSDTKRSVKSKLASSPLSEIQQQMVRLSA 541 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MVGDPAAGGD GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD 60 AALLEEQVHH MLREWRAELN VPSPASSLQA IPPNPSFPPS SFTCANSQSQ GNNREASDPP 120 SETLRLLQLA GAEEEEDDAT SKLVMPRSPM PMQSSHEGHN LSPVLQGGTM AGGAAELMVP 180 RSPLQQMPSS HQSHGHGQDG GQNLQGEAVM GCTAATAAPH LGQGMQGDCG GMAGVTNAMF 240 HDQLYYIDHE LNIDDFLQDD DYKINLPGSN PDGPNTMQGI GQLEQQYNLP LDLPPNSFVD 300 ANNSAQSSGD VFFHMSDLLT TMCPSPSQYL GPKCALWDCG RPVRGSDECQ HYCNPYHAGL 360 ALNDDGLLGT RPVMRPRGID LKDGPLFAAL SAKVQGKNVG IPVCEGAATT KSPWNAPELF 420 DLSLLEGESL REWLFFDTPR RAFDSGNRKQ RSLPDYNGRG WHESRKQVMK DFGGLKRSYY 480 MDPQPSSNYE WHLFEYETND SDALALYRLE YKSSDTKRSV KSKLASSPLS EIQQQMVRLS 540 ADSPVESKRT ARSRAKANQK DNNSNAYPAL NTPVQVSASN AHQTMSVNTP DQVNVSNAYQ 600 TMPLNTSNQP GPSNAYHAAS QMDQMTFLDG SVVYGPHLPY GYSTERSDFY WNPSDGT

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MVGDPAAGGD GGRGSSGGKG SSRSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD  60
AALLEEQVHH MLREWRAELN VPSPASSLQA IPPNPSFPPS SFTCANSQSQ GNNREASDPP  120
SETLRLLQLA GAEEEEDDAT SKLVMPRSPM PMQSSHEGHN LSPVLQGGTM AGGAAELMVP  180
RSPLQQMPSS HQSHGHGQDG GQNLQGEAVM GCTAATAAPH LGQGMQGDCG GMAGVTNAMF  240
HDQLYYIDHE LNIDDFLQDD DYKINLPGSN PDGPNTMQGI GQLEQQYNLP LDLPPNSFVD  300
ANNSAQSSGD VFFHMSDLLT TMCPSPSQYL GPKCALWDCG RPVRGSDECQ HYCNPYHAGL  360
ALNDDGLLGT RPVMRPRGID LKDGPLFAAL SAKVQGKNVG IPVCEGAATT KSPWNAPELF  420
DLSLLEGESL REWLFFDTPR RAFDSGNRKQ RSLPDYNGRG WHESRKQVMK DFGGLKRSYY  480
MDPQPSSNYE WHLFEYETND SDALALYRLE YKSSDTKRSV KSKLASSPLS EIQQQMVRLS  540
ADSPVESKRT ARSRAKANQK DNNSNAYPAL NTPVQVSASN AHQTMSVNTP DQVNVSNAYQ  600
TMPLNTSNQP GPSNAYHAAS QMDQMTFLDG SVVYGPHLPY GYSTERSDFY WNPSDGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069076	0.0	AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640409.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-112	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0E0A1L4	0.0	A0A0E0A1L4_9ORYZ; Uncharacterized protein
STRING	OGLUM05G24010.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-110	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]