PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21650.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 311aa    MW: 35255.7 Da    PI: 8.9695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18139226196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++ h  + +++ +++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l + ++f  ++
  OGLUM05G21650.1 139 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 224
                      89*********************8885.3.36679***************..555444..***********************9876777..55 PP

                      EE CS
               B3  95 kv 96 
                       +
  OGLUM05G21650.1 225 YI 226
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-21131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-24132228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-27137228No hitNo description
PROSITE profilePS5086312.464139230IPR003340B3 DNA binding domain
SMARTSM010192.5E-23139230IPR003340B3 DNA binding domain
PfamPF023624.5E-17139227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK  60
FEVGATEVRR SSRARNSVSY KENFDELDSF LRRRRGSRIR STEQGRDYTG RVASYEQQQR  120
AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG  180
EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANEPEPA  240
DEEAVGDKDT STEDAAEQDD SPNAEPLKGA KRRKLRGRRL WVFHKTIITL FVAATDRVFT  300
IIGVPLTTVE T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
GenBankHQ8588770.0HQ858877.1 Oryza sativa Japonica Group isolate UT1755 ABIVP1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639490.10.0B3 domain-containing protein Os05g0481400 isoform X1
SwissprotQ5KQI40.0Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0E0A0S20.0A0A0E0A0S2_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21650.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]