PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21440.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 332aa    MW: 35384.2 Da    PI: 4.5118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.23.3e-23126191159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 
                      +dD++ WrKYGqK++k+s++pr YYrC+++   gC+++k+v++s++d +    v +itY geH+++
  OGLUM05G21440.1 126 MDDKFLWRKYGQKDIKNSKYPRFYYRCSYKddhGCTATKQVQQSEDDDDtaspVYVITYFGEHTCR 191
                      58***************************99999**********998762233578*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.878121188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-24122191IPR003657WRKY domain
SuperFamilySSF1182901.44E-22123191IPR003657WRKY domain
SMARTSM007743.1E-33126192IPR003657WRKY domain
PfamPF031066.2E-24127191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALTMVSLAA IADRKPTAAS AQLVAEGRES AARLYALLVG SSALHGPVGL TEQILLCFDR  60
ALAKLHGVNL AGAEDDDDAA GNGNSRKRKS GRGRGLTAAS AAASSKRMRV SSAGGNGARI  120
ERKATMDDKF LWRKYGQKDI KNSKYPRFYY RCSYKDDHGC TATKQVQQSE DDDDTASPVY  180
VITYFGEHTC RPGIDAAAMV VDGGEEEDQL SPAQMVISFA SSGGGGDASV SWPCSGDDAQ  240
NNSETSHESR PPDQAPAGEE EERLRPCTTA DVSDEPIMDQ STPPAPELLA DLKPMDGCLL  300
DGESLFGMDE LVYFHELSAA LGLLDRDWAA PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19126191869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447370.0AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.10.0probable WRKY transcription factor 38
TrEMBLA0A0E0A0P60.0A0A0E0A0P6_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21440.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-21WRKY DNA-binding protein 38