PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21430.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 285aa    MW: 31641.9 Da    PI: 7.5398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.56.5e-19141202259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dg++WrKYG K++ +sefpr YYrC ++   +C++kk v++++ + p  + +t + eH+++
  OGLUM05G21430.1 141 NDGFHWRKYGEKKILNSEFPRLYYRCGYSderKCQAKKYVQQENnKHPPEFRVTLTKEHTCN 202
                      7**************************998899*******987615788999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-20133202IPR003657WRKY domain
SuperFamilySSF1182901.07E-19134202IPR003657WRKY domain
SMARTSM007747.7E-28140203IPR003657WRKY domain
PfamPF031063.7E-21141201IPR003657WRKY domain
PROSITE profilePS5081114.47141185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MARRLPKSER SPSPPPPPPG DQRDAAIQEL SKGSELATQL MAQLELIPER ELNGRRDDAL  60
ANVRSLSMSL SSSLYALRSE RREHYYCGSS SSGGAGPAAV TSVSGGGRGG GSGARNKTKR  120
RRGKHGEELT ETVFVTTTPE NDGFHWRKYG EKKILNSEFP RLYYRCGYSD ERKCQAKKYV  180
QQENNKHPPE FRVTLTKEHT CNTLFQDQPS SSSTNSQVLD FTKASISSPL MDSHVGAPTL  240
KEEEEEEVPS IDESSRIMST IMRNYGAYGD YDESSPQPWN GAGWQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.11e-157probable WRKY transcription factor 63
TrEMBLA0A0E0A0P50.0A0A0E0A0P5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21430.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-14WRKY DNA-binding protein 70