PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G21420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 322aa    MW: 34414.6 Da    PI: 4.428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G21420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.4e-26119179259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  OGLUM05G21420.1 119 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSIYVITYFGDHTCS 179
                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27112179IPR003657WRKY domain
SuperFamilySSF1182902.62E-25114180IPR003657WRKY domain
SMARTSM007741.1E-39118180IPR003657WRKY domain
PROSITE profilePS5081121.058119181IPR003657WRKY domain
PfamPF031062.8E-26119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALIATGATA SPASSMASEL MAQGRESAAV LEALLHGASL PPAHGGAHAL AAEILRCCDR  60
ALAALRAGGD AESSSPGTKR SKPATAQPAT RRRRRATASG GGAAAAAETA RVDRARTSED  120
GFLWRKYGQK EIKNSKHPRL YYRCSYKDDH GCTATKQVQQ SEEDPSIYVI TYFGDHTCSC  180
QTAAAMDDDD DDDENSQHFV IHFGSATASR NGSPPLLYDD DDDGDVWRET AATPPSSRQS  240
RSSPEVDGEE SGVKMSKEEP VDSCPAPSAV SSPADVVSCS SPAMEPDLLR CLNWDDDFGD  300
SSFVDADEFM NFDEIDLFQI YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21119178968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-169probable WRKY transcription factor 70
TrEMBLA0A0E0A0P40.0A0A0E0A0P4_9ORYZ; Uncharacterized protein
STRINGOGLUM05G21420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-21WRKY DNA-binding protein 70