PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G17090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 840aa    MW: 91890.3 Da    PI: 6.1924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G17090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.35.7e-35169243276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  OGLUM05G17090.1 169 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 243
                      ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-27163230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.487166243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-33167246IPR004333Transcription factor, SBP-box
PfamPF031106.8E-27169243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MDAPGGGGGG GGGGVDAGEP VWDWGNLLDF AVHDDDSLVL PWGDDSIGIE ADPAEAALLP  60
PAPSPQPAEA EAEAAGPASL PSSMQAEGSK RRVRKRDPRL VCPNYLAGRV PCACPEIDEM  120
AAALEVEDVA TELLAGARKK PKGAGRGSGA AVGGSGGGAS RGTPAEMKCQ VPGCEADIRE  180
LKGYHRRHRV CLRCAHAAAV MLDGVQKRYC QQCGKFHILL DFDEDKRSCR RKLERHNKRR  240
RRKPDSKGIL EKDIDDQLDF SADGSGDGEL REENIDVTTS ETLETVLSNK VLDRETPVGS  300
DDVLSSPTCA QPSLQIDQSK SLVTFAASVE ACLGTKQENT KLTNSPVHDT KSTYSSSCPT  360
GRVSFKLYDW NPAEFPRRLR HQIFEWLSSM PVELEGYIRP GCTILTVFVA MPQHMWDKLS  420
EDTGNLVKSL VNAPNSLLLG KGAFFIHVNN MIFQVLKDGA TLTSTRLEVQ SPRIHYVHPS  480
WFEAGKPIDL ILCGSSLDQP KFRSLVSFDG LYLKHDCRRI LSHETFDCIG SGEHILDSQH  540
EIFRINITTS KLDTHGPAFV EVENMFGLSN FVPILVGSKH LCSELEQIHD ALCGSSDISS  600
DPCELRGLRQ TAMSGFLIDI GWLIRKPSID EFQNLLSLAN IQRWICMMKF LIQNDFINVL  660
EIIVNSLDNI IGSELLSNLE KGRLENHVTE FLGYVSEARN IVDNRPKYDK QRQVDTRWAG  720
DYAPNQPKLG ISVPLAESTG TSGEHDLHST NAASGEEENM PLVTKALPHR QCCHPEISAR  780
WLNAASIGAF PGGAMRMRLA TTVVIGAVVC FAACVVLFHP HRVGVLAAPV KRYLSRNYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-37168248585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225243KRSCRRKLERHNKRRRRKP
2229241RRKLERHNKRRRR
3236243NKRRRRKP
4237242KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A0D9ZZ270.0A0A0D9ZZ27_9ORYZ; Uncharacterized protein
STRINGOGLUM05G17090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-145squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]