PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G16390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 368aa MW: 40331.1 Da PI: 8.3684 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 45.2 | 2e-14 | 182 | 224 | 1 | 44 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 k+r rW +eLHerFv+ v qL G +kAtP +il l++ ++Lt++ OGLUM05G16390.1 182 KKRFRWPKELHERFVSIVLQL-GVDKATPNQILPLLNREDLTRD 224 68*******************.********************97 PP | |||||||
2 | Response_reg | 43.2 | 2.2e-15 | 65 | 153 | 26 | 109 |
EEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 26 vaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 v++++ ++a + ++e++ +D++l+ + p +dG++ll+ + +++lp++v++a +++ ++l++++ Ga d+l+Kp eel + OGLUM05G16390.1 65 VDAVTPKTAARDAVEELHenpwsYDMVLTEVHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVNSGACDYLVKPLRHEELKN 153 5556666666666666666669************99********9755.559**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.13E-21 | 24 | 167 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.0E-29 | 24 | 167 | No hit | No description |
SMART | SM00448 | 7.7E-9 | 25 | 155 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 27.579 | 26 | 159 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.62E-14 | 28 | 158 | No hit | No description |
Pfam | PF00072 | 1.2E-10 | 72 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
TIGRFAMs | TIGR01557 | 8.6E-10 | 182 | 225 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.3E-13 | 182 | 225 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-6 | 182 | 225 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MAGSCSVAGS NKSKLADEEF SPVGMRVLLI DESTTYLKII TKLLLNCGYK GLTVTNFEIT 60 YVWRVDAVTP KTAARDAVEE LHENPWSYDM VLTEVHAPAG IDGFNLLQYA GTDMDLPVVV 120 FSADDDKRTV LKCVNSGACD YLVKPLRHEE LKNIWQHVYR RKLRSGGRRA AAAGNSSKGE 180 IKKRFRWPKE LHERFVSIVL QLGVDKATPN QILPLLNRED LTRDQRFRIA LTKSKALPSC 240 STIPIGETVH GIPLALQAIG TGNNQHLIVP FNRITFVRPR GVEICQNGVV GGLVTGNNNV 300 VVPTATSIIA RAFGREIVNG ADLFDHGTLI RDSSSTSHDG AQNELGETNL AFELMAKKGS 360 DVEPRIGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC132483 | 0.0 | AC132483.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0014C03, complete sequence. | |||
GenBank | AC134932 | 0.0 | AC134932.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092G21, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881540.1 | 1e-150 | two-component response regulator ARR11-like | ||||
TrEMBL | A0A0D9ZYU0 | 0.0 | A0A0D9ZYU0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G16390.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17064 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-35 | response regulator 10 |