PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G12430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 327aa MW: 34169 Da PI: 5.1927 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74 | 1.9e-23 | 117 | 178 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqKe+++s++p++Y+rCt++ C+++++v+r+++dp +tY geH+++ OGLUM05G12430.1 117 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 178 58***************************98878*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-25 | 104 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.61 | 112 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-23 | 115 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-34 | 117 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-22 | 118 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MTSSMSPAPA PPYAQVMEDM EKGRELAAQL QGLLRDSPEA GRIVDQILHT FSRAMRALDK 60 AAVSAAGGEG SEVQSEVTCG GGASAGGKRK APAADRKANC RRRTQQSSGN TVVVKNLDDG 120 QAWRKYGQKE IQNSKHPKAY FRCTHKYDQL CTAQRQVQRC DDDPASYRVT YIGEHTCRDP 180 ATAPIIAAHV IHQVAAGDDD DGCGGLHAGS RLISFVAAPA APVDAAAAPT TSTITTVTAP 240 GPLLQPLKVE GGVGSSDQEE VLSSLTPGSS AVRGGGGGAG PFGPDQGDVT SSLHCSYDAD 300 AFAVAGMEFF KDDEVVFDLD DIMGLSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-46 | 110 | 178 | 1 | 69 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00408 | DAP | Transfer from AT3G56400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ298181 | 0.0 | DQ298181.1 Oryza sativa WRKY transcription factor 45 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637594.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0D9ZXF2 | 0.0 | A0A0D9ZXF2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G12430.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7656 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-26 | WRKY DNA-binding protein 70 |