PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G12060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 23819.4 Da PI: 5.7264 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.7 | 4e-10 | 51 | 85 | 18 | 55 |
AP2 18 eIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 eIrdp + kr +lg+f+taeeAa+ ++ a+++++g OGLUM05G12060.1 51 EIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 85 79999.....445************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.42E-19 | 44 | 93 | No hit | No description |
SMART | SM00380 | 6.1E-16 | 44 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 49 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.249 | 51 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-12 | 51 | 94 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSPADSLAAG RSRRVGASMP RPKRVRVYFV DADATDTDSS GDERSRPRVR EIRDPSLQKR 60 LWLGTFDTAE EAAAVYDDAA LRIKGSHAVT NFPSDSDTPS AKAKQMKLHP RRHTTPDKTT 120 PSSSTAAAAK ASVPDPKPAP PEEDRANDSS FNPFASPTSV LRYAAADEVT APSFEHLLVE 180 LGDLSAPPPS TKAAEFDWLP WWEGEDFVTA GLTASNAVSV K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC124141 | 0.0 | AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence. | |||
GenBank | AK110613 | 0.0 | AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637513.1 | 1e-127 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0D9ZXB5 | 1e-155 | A0A0D9ZXB5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM05G12060.1 | 1e-156 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 1e-07 | ERF domain protein 10 |